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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS14580 and ABID97_RS14585 are separated by 225 nucleotides
ABID97_RS14585 and ABID97_RS14590 are separated by 17 nucleotides
ABID97_RS14590 and ABID97_RS14595 are separated by 252 nucleotides
ABID97_RS14595 and ABID97_RS14600 are separated by 33 nucleotides
ABID97_RS14580: ABID97_RS14580 - histidine phosphatase family protein, at 3,030,812 to 3,031,273
_RS14580
ABID97_RS14585: ABID97_RS14585 - hypothetical protein, at 3,031,499 to 3,032,290
_RS14585
ABID97_RS14590: ABID97_RS14590 - Ppx/GppA phosphatase family protein, at 3,032,308 to 3,033,828
_RS14590
ABID97_RS14595: ABID97_RS14595 - phosphate ABC transporter substrate-binding protein PstS, at 3,034,081 to 3,035,118
_RS14595
ABID97_RS14600: ABID97_RS14600 - phosphate ABC transporter permease subunit PstC, at 3,035,152 to 3,036,231
_RS14600
Group
Condition
ABID97
_RS14580
ABID97
_RS14585
ABID97
_RS14590
ABID97
_RS14595
ABID97
_RS14600
carbon source
L-tyrosine (C)
-0.2
-0.1
-0.4
+0.2
-0.4
carbon source
D,L-Malic Acid (C)
-0.2
+0.0
+0.4
-0.3
-0.5
carbon source
acetate (C)
+0.2
-0.1
+0.2
-0.1
-0.6
carbon source
D-Serine (C)
+0.1
-0.0
+0.1
-0.2
-0.4
carbon source
L-tyrosine (C)
+0.1
-0.0
-0.0
+0.1
-0.7
carbon source
D-Sorbitol (C)
+0.2
-0.0
-0.1
-0.2
-0.3
carbon source
D-Serine (C)
-0.4
-0.1
+0.2
-0.2
+0.1
carbon source
Glucuronamide (C)
-0.2
+0.1
+0.2
-0.3
-0.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.2
-0.1
+0.2
-0.5
+0.4
carbon source
propionate (C)
-0.7
-0.1
-0.1
+0.1
+0.6
carbon source
casaminos (C)
-0.3
+0.0
-0.3
-0.0
+0.3
carbon source
Glucuronamide (C)
-0.6
+0.1
+0.4
-0.0
-0.0
carbon source
D-Gluconic Acid (C)
-0.0
-0.1
+0.4
-0.1
-0.3
carbon source
L-Malic (C)
+0.2
-0.1
+0.2
-0.1
-0.3
carbon source
L-Arabinose (C)
+0.3
-0.1
+0.1
+0.1
-0.3
phage
V1_10
-0.3
+0.2
+0.1
+0.2
-0.2
r2a outgrowth control
R2A outgrowth control
+0.6
+0.1
+0.2
-0.1
-0.7
carbon source
Formate (C)
-0.1
-0.2
-0.1
-0.1
+0.6
phage
V2_100
-0.3
+0.1
+0.1
+0.4
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
-0.0
+0.3
+0.0
-0.5
carbon source
Formate (C)
-0.2
-0.1
+0.4
+0.0
+0.3
carbon source
L-Alanine (C)
+0.4
-0.0
+0.5
+0.0
-0.4
carbon source
butyrate (C)
+0.4
+0.1
+0.1
-0.2
+0.2
carbon source
L-Leucine (C)
+0.1
-0.1
+0.4
+0.1
+0.2
carbon source
D-Xylose (C)
+0.5
-0.0
+0.3
+0.1
-0.1
carbon source
L-Fucose (C)
+0.4
-0.1
+0.3
-0.1
+0.4
carbon source
L-Alanine (C)
-0.2
+0.0
+1.3
-0.1
-0.2
carbon source
butyrate (C)
-0.2
+0.0
+0.6
+0.2
+0.4
control
NP
+0.2
+0.1
+0.2
+0.2
+0.2
phage
V1_1
+0.3
+0.0
+0.2
+0.3
+0.2
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