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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS14500 and ABID97_RS14505 are separated by 365 nucleotides
ABID97_RS14505 and ABID97_RS14510 are separated by 2 nucleotides
ABID97_RS14510 and ABID97_RS14515 are separated by 629 nucleotides
ABID97_RS14515 and ABID97_RS14520 are separated by 319 nucleotides
ABID97_RS14500: ABID97_RS14500 - hypothetical protein, at 3,014,175 to 3,015,062
_RS14500
ABID97_RS14505: ABID97_RS14505 - hypothetical protein, at 3,015,428 to 3,017,842
_RS14505
ABID97_RS14510: ABID97_RS14510 - PIN domain-containing protein, at 3,017,845 to 3,018,792
_RS14510
ABID97_RS14515: ABID97_RS14515 - DUF2513 domain-containing protein, at 3,019,422 to 3,019,796
_RS14515
ABID97_RS14520: ABID97_RS14520 - hypothetical protein, at 3,020,116 to 3,020,406
_RS14520
Group
Condition
ABID97
_RS14500
ABID97
_RS14505
ABID97
_RS14510
ABID97
_RS14515
ABID97
_RS14520
carbon source
D,L-Lactate (C)
-0.1
-1.0
-0.1
-0.3
N.D.
carbon source
L-Glutamic (C)
-0.0
-0.7
-0.2
-0.4
N.D.
carbon source
D-Gluconic Acid (C)
+0.1
-1.1
-0.2
-0.1
N.D.
carbon source
D-Sorbitol (C)
-0.0
-1.5
-0.1
+0.3
N.D.
carbon source
succinate (C)
-0.1
-0.9
-0.0
-0.2
N.D.
carbon source
D,L-Lactate (C)
+0.0
-1.1
-0.1
-0.1
N.D.
carbon source
L-Lactate (C)
+0.1
-1.1
+0.1
-0.2
N.D.
carbon source
D-Gluconic Acid (C)
+0.2
-1.1
-0.1
-0.2
N.D.
carbon source
D-Fructose (C)
+0.0
-0.9
-0.1
-0.2
N.D.
carbon source
Fumarate (C)
+0.2
-0.9
-0.1
-0.3
N.D.
carbon source
Tween 20 (C)
+0.1
-0.6
-0.1
-0.5
N.D.
carbon source
D-Xylose (C)
+0.1
-0.7
+0.0
-0.4
N.D.
carbon source
D-Sorbitol (C)
+0.2
-1.3
+0.0
-0.0
N.D.
carbon source
L-Lactate (C)
+0.2
-1.1
+0.0
-0.1
N.D.
carbon source
Glycolic Acid (C)
+0.3
-0.9
-0.1
-0.3
N.D.
carbon source
D-Glucuronic Acid (C)
+0.1
-0.7
-0.1
-0.3
N.D.
carbon source
Glycerol (C)
+0.1
-0.8
-0.1
-0.2
N.D.
carbon source
D-Lactate (C)
+0.1
-1.0
+0.0
-0.1
N.D.
carbon source
D-Galactose (C)
+0.2
-1.0
-0.2
+0.1
N.D.
carbon source
L-Histidine (C)
+0.3
-1.0
-0.2
-0.0
N.D.
carbon source
D-Galactose (C)
-0.2
-0.9
+0.0
+0.2
N.D.
carbon source
2-Deoxy-D-Ribose (C)
+0.3
-1.1
-0.1
+0.1
N.D.
carbon source
L-Histidine (C)
+0.2
-1.2
+0.0
+0.1
N.D.
carbon source
Gly-Glu (C)
+0.2
-0.9
+0.1
-0.2
N.D.
carbon source
L-Fucose (C)
+0.3
-0.4
-0.0
-0.5
N.D.
carbon source
Fumarate (C)
+0.2
-0.8
+0.2
-0.2
N.D.
carbon source
L-Arabinose (C)
+0.4
-0.8
-0.1
+0.1
N.D.
carbon source
L-Asparagine (C)
+0.2
-0.7
-0.1
+0.3
N.D.
carbon source
Tween 20 (C)
+0.2
-0.7
-0.1
+0.3
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.2
-0.5
+0.1
+0.7
N.D.
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