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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS14300 and ABID97_RS14305 are separated by 79 nucleotides
ABID97_RS14305 and ABID97_RS14310 overlap by 2 nucleotides
ABID97_RS14310 and ABID97_RS14315 overlap by 4 nucleotides
ABID97_RS14315 and ABID97_RS14320 are separated by 33 nucleotides
ABID97_RS14300: ABID97_RS14300 - hypothetical protein, at 2,973,998 to 2,974,201
_RS14300
ABID97_RS14305: ABID97_RS14305 - arylesterase, at 2,974,281 to 2,974,961
_RS14305
ABID97_RS14310: ABID97_RS14310 - ATP-binding cassette domain-containing protein, at 2,974,960 to 2,975,682
_RS14310
ABID97_RS14315: ABID97_RS14315 - hypothetical protein, at 2,975,679 to 2,976,659
_RS14315
ABID97_RS14320: ABID97_RS14320 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,976,693 to 2,977,439
_RS14320
Group
Condition
ABID97
_RS14300
ABID97
_RS14305
ABID97
_RS14310
ABID97
_RS14315
ABID97
_RS14320
carbon source
L-Histidine (C)
N.D.
-2.5
N.D.
-0.2
-0.5
plant outgrowth control
Plant outgrowth control
N.D.
-1.0
N.D.
-0.4
-1.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
-0.0
N.D.
-0.7
-1.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
+0.5
N.D.
-0.9
-1.0
carbon source
L-Fucose (C)
N.D.
-0.7
N.D.
-0.5
+0.3
r2a outgrowth control
R2A outgrowth control
N.D.
-0.9
N.D.
-0.3
+0.4
carbon source
Formate (C)
N.D.
-0.9
N.D.
-0.2
+0.6
carbon source
L-Glutamine (C)
N.D.
+0.7
N.D.
-0.5
-0.5
carbon source
L-Phenylalanine (C)
N.D.
-0.4
N.D.
-0.4
+0.9
carbon source
L-Asparagine (C)
N.D.
+1.0
N.D.
-0.1
-0.6
carbon source
L-Leucine (C)
N.D.
+0.4
N.D.
-0.5
+0.5
carbon source
L-Lactate (C)
N.D.
+1.0
N.D.
-0.2
-0.4
carbon source
L-Phenylalanine (C)
N.D.
-0.7
N.D.
-0.1
+1.4
carbon source
Adenine (C)
N.D.
+0.5
N.D.
-0.3
+0.6
carbon source
L-Malic (C)
N.D.
+1.0
N.D.
-0.3
+0.2
carbon source
Adenine (C)
N.D.
+0.5
N.D.
-0.3
+0.8
carbon source
Glycerol (C)
N.D.
+1.1
N.D.
-0.3
+0.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
+1.6
N.D.
-0.2
-0.3
carbon source
L-Arabinose (C)
N.D.
+1.0
N.D.
-0.2
+0.3
carbon source
L-Leucine (C)
N.D.
+0.3
N.D.
-0.2
+1.0
carbon source
D-Arabinose (C)
N.D.
+1.0
N.D.
-0.3
+0.7
carbon source
Gly-Glu (C)
N.D.
+0.4
N.D.
+0.2
+0.8
carbon source
D-Mannose (C)
N.D.
+0.8
N.D.
-0.2
+0.9
carbon source
D-Mannose (C)
N.D.
+1.2
N.D.
-0.0
+0.3
carbon source
D-Glucuronic Acid (C)
N.D.
+1.2
N.D.
-0.3
+0.6
carbon source
Glucuronamide (C)
N.D.
+1.0
N.D.
-0.5
+1.1
carbon source
propionate (C)
N.D.
+1.1
N.D.
-0.0
+0.6
carbon source
L-Alanine (C)
N.D.
+1.5
N.D.
-0.1
+0.6
carbon source
L-Tryptophan (C)
N.D.
+1.0
N.D.
+0.2
+0.9
carbon source
D-Arabinose (C)
N.D.
+0.9
N.D.
-0.0
+1.4
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