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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS14160 and ABID97_RS14165 overlap by 4 nucleotides
ABID97_RS14165 and ABID97_RS14170 are separated by 30 nucleotides
ABID97_RS14170 and ABID97_RS14175 are separated by 106 nucleotides
ABID97_RS14175 and ABID97_RS14180 overlap by 4 nucleotides
ABID97_RS14160: ABID97_RS14160 - cell division protein ZapE, at 2,945,666 to 2,946,766
_RS14160
ABID97_RS14165: ABID97_RS14165 - hypothetical protein, at 2,946,763 to 2,947,434
_RS14165
ABID97_RS14170: ABID97_RS14170 - protein phosphatase 2C domain-containing protein, at 2,947,465 to 2,948,235
_RS14170
ABID97_RS14175: ABID97_RS14175 - DUF465 domain-containing protein, at 2,948,342 to 2,948,545
_RS14175
ABID97_RS14180: ABID97_RS14180 - ATP-dependent DNA helicase, at 2,948,542 to 2,950,602
_RS14180
Group
Condition
ABID97
_RS14160
ABID97
_RS14165
ABID97
_RS14170
ABID97
_RS14175
ABID97
_RS14180
carbon source
4-Hydroxybenzoic Acid (C)
-5.3
N.D.
-0.4
N.D.
-0.3
carbon source
Gly-Glu (C)
-4.4
N.D.
-0.3
N.D.
-0.4
carbon source
acetate (C)
-4.7
N.D.
-0.1
N.D.
+0.0
carbon source
succinate (C)
-4.8
N.D.
+0.1
N.D.
-0.0
carbon source
L-Malic (C)
-4.8
N.D.
+0.1
N.D.
+0.2
carbon source
4-Hydroxybenzoic Acid (C)
-4.0
N.D.
-0.4
N.D.
+0.0
carbon source
L-Malic (C)
-4.4
N.D.
+0.0
N.D.
+0.1
carbon source
acetate (C)
-3.9
N.D.
-0.1
N.D.
-0.1
carbon source
Glycolic Acid (C)
-4.2
N.D.
-0.0
N.D.
+0.1
carbon source
succinate (C)
-4.1
N.D.
+0.0
N.D.
+0.1
carbon source
Fumarate (C)
-3.7
N.D.
+0.0
N.D.
-0.0
carbon source
Gly-Glu (C)
-3.6
N.D.
+0.1
N.D.
-0.1
carbon source
pyruvate (C)
-3.5
N.D.
-0.0
N.D.
+0.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-3.2
N.D.
-0.2
N.D.
+0.1
carbon source
pyruvate (C)
-3.2
N.D.
+0.1
N.D.
+0.0
carbon source
Tween 20 (C)
-3.1
N.D.
-0.2
N.D.
+0.2
carbon source
D-Lactate (C)
-3.0
N.D.
-0.1
N.D.
+0.0
carbon source
casaminos (C)
-2.8
N.D.
-0.1
N.D.
-0.1
carbon source
butyrate (C)
-2.6
N.D.
-0.3
N.D.
-0.1
carbon source
L-Tryptophan (C)
-2.9
N.D.
+0.1
N.D.
-0.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-2.6
N.D.
-0.1
N.D.
-0.3
carbon source
D-Gluconic Acid (C)
-3.1
N.D.
-0.0
N.D.
+0.1
carbon source
L-Leucine (C)
-3.0
N.D.
+0.0
N.D.
+0.1
carbon source
2-Deoxy-D-Ribose (C)
-3.0
N.D.
+0.0
N.D.
+0.1
carbon source
Fumarate (C)
-2.8
N.D.
-0.1
N.D.
-0.0
carbon source
L-Leucine (C)
-2.9
N.D.
+0.1
N.D.
-0.1
carbon source
casaminos (C)
-2.7
N.D.
-0.1
N.D.
-0.1
carbon source
Tween 20 (C)
-2.8
N.D.
-0.0
N.D.
+0.1
carbon source
L-Glutamine (C)
-2.7
N.D.
-0.1
N.D.
+0.1
carbon source
D,L-Lactate (C)
-2.5
N.D.
-0.2
N.D.
+0.2
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