Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS13500 and ABID97_RS13505 overlap by 4 nucleotidesABID97_RS13505 and ABID97_RS13510 are separated by 11 nucleotidesABID97_RS13510 and ABID97_RS13515 overlap by 4 nucleotidesABID97_RS13515 and ABID97_RS13520 are separated by 6 nucleotides ABID97_RS13500: ABID97_RS13500 - tripartite tricarboxylate transporter substrate-binding protein, at 2,809,536 to 2,809,748 _RS13500 ABID97_RS13505: ABID97_RS13505 - ornithine cyclodeaminase family protein, at 2,809,745 to 2,810,788 _RS13505 ABID97_RS13510: ABID97_RS13510 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,810,800 to 2,812,275 _RS13510 ABID97_RS13515: ABID97_RS13515 - MMPL family transporter, at 2,812,272 to 2,814,680 _RS13515 ABID97_RS13520: ABID97_RS13520 - YCF48-related protein, at 2,814,687 to 2,815,730 _RS13520
Group Condition ABID97_RS13500 ABID97_RS13505 ABID97_RS13510 ABID97_RS13515 ABID97_RS13520
phage V2_100 -2.4 -0.0 -0.3 +0.2 N.D.
carbon source D-Ribose (C) -0.7 -0.4 -0.1 +0.1 N.D.
carbon source D-Arabinose (C) -1.3 -0.1 +0.4 +0.0 N.D.
carbon source L-Alanine (C) +0.2 -0.7 -0.4 +0.1 N.D.
phage V1_10 -0.6 -0.1 +0.3 -0.2 N.D.
carbon source D-Glucose (C) -0.7 +0.3 +0.2 -0.2 N.D.
carbon source L-tyrosine (C) +0.5 -0.6 +0.1 -0.2 N.D.
carbon source D-Galactose (C) -0.5 +0.5 -0.2 +0.1 N.D.
carbon source a-Ketoglutaric (C) +0.4 -0.5 +0.3 -0.1 N.D.
carbon source L-Arabinose (C) +0.0 -0.3 +0.7 -0.1 N.D.
carbon source L-Fucose (C) +0.5 +0.3 -0.5 -0.0 N.D.
carbon source propionate (C) +0.6 +0.4 -0.6 +0.0 N.D.
carbon source L-Leucine (C) +0.7 +0.1 +0.2 -0.4 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.0 +0.2 +0.6 -0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.5 +0.3 +0.4 N.D.
carbon source L-Glutamic (C) +0.4 -0.3 +0.7 -0.1 N.D.
carbon source Tween 20 (C) +0.7 -0.1 +0.3 -0.2 N.D.
carbon source L-Threonine (C) +0.1 +0.2 +0.7 -0.3 N.D.
carbon source Glycolic Acid (C) +0.6 +0.1 +0.6 -0.5 N.D.
carbon source D,L-Malic Acid (C) +0.6 -0.3 +0.8 +0.0 N.D.
carbon source L-Asparagine (C) -0.0 +0.7 +0.3 +0.1 N.D.
carbon source Fumarate (C) +0.4 +0.3 +0.4 +0.1 N.D.
carbon source butyrate (C) +0.9 +0.0 +0.4 -0.2 N.D.
r2a outgrowth control R2A outgrowth control +0.6 +0.1 +0.4 +0.0 N.D.
carbon source Fumarate (C) +0.3 +0.1 +0.6 +0.1 N.D.
carbon source propionate (C) +0.1 +0.1 +1.0 +0.2 N.D.
carbon source acetate (C) +0.5 +0.3 +0.7 -0.0 N.D.
carbon source Gly-Glu (C) +0.5 +0.2 +0.6 +0.2 N.D.
carbon source D-Mannose (C) +0.8 +0.5 +0.2 -0.0 N.D.
carbon source L-Glutamic (C) +0.8 +0.3 +0.7 -0.1 N.D.
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