Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS13395 and ABID97_RS13400 are separated by 8 nucleotidesABID97_RS13400 and ABID97_RS13405 are separated by 4 nucleotidesABID97_RS13405 and ABID97_RS13410 overlap by 4 nucleotidesABID97_RS13410 and ABID97_RS13415 are separated by 68 nucleotides ABID97_RS13395: ABID97_RS13395 - tripartite tricarboxylate transporter substrate-binding protein, at 2,790,063 to 2,791,031 _RS13395 ABID97_RS13400: ABID97_RS13400 - cupin domain-containing protein, at 2,791,040 to 2,791,621 _RS13400 ABID97_RS13405: ABID97_RS13405 - fumarylacetoacetate hydrolase family protein, at 2,791,626 to 2,792,615 _RS13405 ABID97_RS13410: ABID97_RS13410 - NAD-dependent epimerase/dehydratase family protein, at 2,792,612 to 2,793,565 _RS13410 ABID97_RS13415: ABID97_RS13415 - PDR/VanB family oxidoreductase, at 2,793,634 to 2,794,584 _RS13415
Group Condition ABID97_RS13395 ABID97_RS13400 ABID97_RS13405 ABID97_RS13410 ABID97_RS13415
carbon source L-Arabinose (C) -0.3 N.D. -0.5 +0.4 -0.4
carbon source D-Gluconic Acid (C) -0.2 N.D. -0.4 +0.3 -0.3
carbon source D,L-Lactate (C) -0.3 N.D. -0.3 +0.2 -0.1
carbon source L-Glutamic (C) +0.0 N.D. -0.3 +0.4 -0.6
carbon source D-Ribose (C) +0.1 N.D. -0.2 +0.2 -0.6
carbon source 2-Deoxy-D-Ribose (C) -0.2 N.D. -0.2 +0.4 -0.4
carbon source Glycerol (C) -0.1 N.D. -0.4 +0.4 -0.1
carbon source L-Leucine (C) -0.4 N.D. -0.3 +0.2 +0.2
carbon source Ethanol (C) -0.1 N.D. +0.2 +0.3 -0.6
carbon source Formate (C) -0.1 N.D. -0.3 +0.5 -0.1
carbon source butyrate (C) -0.0 N.D. -0.6 +0.4 +0.2
carbon source L-Fucose (C) -0.3 N.D. +0.3 +0.2 -0.1
carbon source L-Phenylalanine (C) +0.1 N.D. -0.4 +0.3 +0.1
carbon source L-Proline (C) +0.1 N.D. -0.4 +0.3 +0.1
carbon source propionate (C) +0.2 N.D. -0.7 +0.2 +0.4
carbon source 2-Deoxy-D-Ribose (C) +0.1 N.D. -0.2 +0.2 +0.5
carbon source Fumarate (C) -0.2 N.D. +0.1 +0.5 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 N.D. +0.1 -0.2 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 N.D. -0.4 -0.1 +0.9
carbon source D-Glucose (C) +0.1 N.D. -0.1 +0.5 +0.4
carbon source L-Threonine (C) +0.2 N.D. -0.1 +0.4 +0.4
carbon source Glycerol (C) -0.3 N.D. +0.0 +0.4 +0.7
carbon source 4-Hydroxybenzoic Acid (C) -0.1 N.D. -0.1 +0.7 +0.4
carbon source L-Asparagine (C) -0.1 N.D. +0.0 +0.6 +0.4
phage V2_100 +0.1 N.D. +0.3 -0.2 +0.7
carbon source L-tyrosine (C) -0.1 N.D. +0.2 +0.5 +0.5
carbon source D-Glucose (C) -0.0 N.D. +0.1 +0.7 +0.3
carbon source L-Alanine (C) +0.2 N.D. -0.1 +0.7 +0.4
carbon source D,L-Malic Acid (C) -0.2 N.D. +0.3 +0.2 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. +1.1 +0.2 +0.5
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