Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS13120 and ABID97_RS13125 are separated by 21 nucleotidesABID97_RS13125 and ABID97_RS13130 are separated by 68 nucleotidesABID97_RS13130 and ABID97_RS13135 are separated by 202 nucleotidesABID97_RS13135 and ABID97_RS13140 are separated by 108 nucleotides ABID97_RS13120: ABID97_RS13120 - carboxymuconolactone decarboxylase family protein, at 2,732,425 to 2,732,823 _RS13120 ABID97_RS13125: ABID97_RS13125 - 3-keto-5-aminohexanoate cleavage protein, at 2,732,845 to 2,733,903 _RS13125 ABID97_RS13130: ABID97_RS13130 - TauD/TfdA family dioxygenase, at 2,733,972 to 2,734,820 _RS13130 ABID97_RS13135: ABID97_RS13135 - LuxR C-terminal-related transcriptional regulator, at 2,735,023 to 2,737,704 _RS13135 ABID97_RS13140: ABID97_RS13140 - tripartite tricarboxylate transporter substrate binding protein, at 2,737,813 to 2,738,787 _RS13140
Group Condition ABID97_RS13120 ABID97_RS13125 ABID97_RS13130 ABID97_RS13135 ABID97_RS13140
carbon source L-Arabinose (C) -0.6 -0.3 -0.9 +0.2 -0.1
carbon source L-Histidine (C) -0.0 -0.6 -0.2 -0.3 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.0 +0.8 -1.0 -0.1
carbon source Formate (C) -0.2 -0.2 -0.5 +0.0 +0.4
carbon source pyruvate (C) -0.4 +0.1 -0.5 +0.1 +0.3
carbon source D,L-Lactate (C) -0.4 -0.2 -0.1 -0.0 +0.7
carbon source L-Proline (C) -0.2 -0.4 +0.1 -0.1 +0.6
carbon source acetate (C) +0.2 -0.3 -0.3 -0.0 +0.4
carbon source D-Ribose (C) -0.2 +0.2 -0.4 +0.5 +0.1
carbon source butyrate (C) +0.2 +0.2 +0.3 +0.2 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.0 +0.2 -0.3 +0.8
carbon source L-Alanine (C) -0.3 +0.3 +0.1 -0.4 +0.7
carbon source L-Lactate (C) -0.2 -0.1 -0.2 -0.0 +1.1
carbon source a-Ketoglutaric (C) +0.2 -0.1 +0.1 -0.3 +0.7
carbon source propionate (C) +0.2 -0.3 -0.4 +0.3 +0.9
carbon source Tween 20 (C) +0.3 +0.3 +0.6 -0.5 +0.1
carbon source L-Tryptophan (C) +0.2 -0.3 +0.2 -0.0 +0.6
carbon source D-Gluconic Acid (C) -0.3 +0.1 +0.2 +0.1 +0.7
carbon source D,L-Malic Acid (C) +0.2 +0.1 -0.2 -0.2 +0.9
carbon source L-Glutamine (C) -0.2 +0.1 +0.2 -0.0 +0.8
carbon source D,L-Malic Acid (C) -0.0 -0.3 +0.4 -0.1 +1.0
carbon source D-Serine (C) -0.0 -0.0 +0.4 +0.1 +0.7
carbon source L-tyrosine (C) +0.6 -0.0 +0.1 -0.2 +0.7
carbon source L-tyrosine (C) +0.1 -0.1 -0.1 +0.3 +0.9
carbon source L-Malic (C) -0.2 +0.2 +0.3 +0.1 +0.7
carbon source L-Phenylalanine (C) +0.1 +0.3 +0.2 -0.0 +0.7
carbon source D-Fructose (C) +0.2 -0.2 +0.1 +0.1 +1.0
carbon source L-Lactate (C) +0.3 +0.2 +0.1 +0.1 +0.8
carbon source D,L-Lactate (C) +0.1 +0.0 +0.4 +0.4 +0.5
carbon source L-Alanine (C) +0.7 +0.1 +0.4 +0.1 +0.7
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