Fitness for 5 genes in Variovorax sp. OAS795

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 111 experiments or choose conditions or try the comparative fitness browser

500 ntABID97_RS13010 and ABID97_RS13015 overlap by 4 nucleotidesABID97_RS13015 and ABID97_RS13020 are separated by 35 nucleotidesABID97_RS13020 and ABID97_RS13025 are separated by 157 nucleotidesABID97_RS13025 and ABID97_RS13030 are separated by 85 nucleotides ABID97_RS13010: ABID97_RS13010 - DotU family type IV/VI secretion system protein, at 2,701,956 to 2,702,630 _RS13010 ABID97_RS13015: ABID97_RS13015 - type VI secretion protein IcmF/TssM N-terminal domain-containing protein, at 2,702,627 to 2,706,433 _RS13015 ABID97_RS13020: ABID97_RS13020 - serine hydrolase, at 2,706,469 to 2,708,160 _RS13020 ABID97_RS13025: ABID97_RS13025 - helix-turn-helix domain-containing protein, at 2,708,318 to 2,709,316 _RS13025 ABID97_RS13030: ABID97_RS13030 - AraC family transcriptional regulator, at 2,709,402 to 2,710,391 _RS13030
Group Condition ABID97_RS13010 ABID97_RS13015 ABID97_RS13020 ABID97_RS13025 ABID97_RS13030
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.1 -0.4 -1.3 -0.2
carbon source L-Phenylalanine (C) -0.3 +0.0 -0.2 -1.2 -0.1
carbon source D-Ribose (C) +0.7 +0.0 -0.1 -2.2 +0.1
carbon source L-Leucine (C) +0.1 -0.0 +0.2 -1.4 -0.2
phage V1_10 -0.9 +0.1 -0.0 -0.6 +0.2
carbon source a-Ketoglutaric (C) +0.6 +0.3 +0.2 -2.0 +0.0
carbon source D,L-Malic Acid (C) +0.4 +0.1 +0.0 -1.0 -0.3
carbon source L-Alanine (C) +0.5 -0.1 +0.1 -1.1 -0.0
carbon source Gly-Glu (C) +0.6 +0.2 -0.2 -1.3 +0.2
carbon source D-Ribose (C) +0.8 +0.1 +0.2 -1.7 +0.3
carbon source D-Mannose (C) -0.7 -0.0 -0.4 +0.8 +0.1
carbon source Formate (C) +0.4 +0.0 -0.5 -0.5 +0.4
carbon source D-Glucuronic Acid (C) +0.6 +0.2 -0.3 -0.9 +0.2
carbon source D-Mannose (C) -1.3 +0.1 -0.1 +1.2 +0.0
phage V2_100 -1.7 +0.1 -0.0 +1.0 +0.6
carbon source L-Histidine (C) +0.4 +0.2 +0.3 -0.5 -0.3
r2a outgrowth control R2A outgrowth control +0.1 -0.1 -0.3 +1.1 -0.3
plant outgrowth control Plant outgrowth control -0.4 -0.1 -0.0 +1.2 -0.1
r2a outgrowth control R2A outgrowth control +0.4 +0.1 -0.1 +0.7 +0.4
carbon source L-Alanine (C) -0.5 -0.3 +0.3 +1.5 +0.5
phage V2_1 +0.5 +0.0 +0.1 +1.0 -0.0
carbon source L-tyrosine (C) +0.1 +0.1 +0.2 +1.0 +0.2
carbon source propionate (C) +0.4 +0.1 +0.5 -0.2 +0.9
carbon source D-Arabinose (C) +0.6 -0.0 +0.0 +1.0 +0.3
carbon source L-Glutamic (C) +0.5 -0.0 +0.2 +1.1 +0.2
carbon source butyrate (C) +0.9 -0.0 +0.2 +0.9 +0.1
carbon source D-Arabinose (C) +0.7 +0.2 -0.0 +1.0 +0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.0 +0.1 +0.5 +1.4 +0.1
carbon source Formate (C) +0.8 +0.2 +0.2 +1.0 +0.3
carbon source propionate (C) +0.5 -0.1 +0.1 +0.9 +2.5
remove
ABID97_RS13010
plot		 remove
ABID97_RS13015
plot		 remove
ABID97_RS13020		 remove
ABID97_RS13025
plot		 remove
ABID97_RS13030
plot