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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS12725 and ABID97_RS12730 overlap by 4 nucleotides
ABID97_RS12730 and ABID97_RS12735 overlap by 4 nucleotides
ABID97_RS12735 and ABID97_RS12740 overlap by 17 nucleotides
ABID97_RS12740 and ABID97_RS12745 overlap by 4 nucleotides
ABID97_RS12725: ABID97_RS12725 - pyrroloquinoline-quinone synthase PqqC, at 2,639,964 to 2,640,737
_RS12725
ABID97_RS12730: ABID97_RS12730 - pyrroloquinoline quinone biosynthesis peptide chaperone PqqD, at 2,640,734 to 2,641,027
_RS12730
ABID97_RS12735: ABID97_RS12735 - pyrroloquinoline quinone biosynthesis protein PqqE, at 2,641,024 to 2,642,175
_RS12735
ABID97_RS12740: ABID97_RS12740 - MxaL protein, at 2,642,159 to 2,643,154
_RS12740
ABID97_RS12745: ABID97_RS12745 - MxaK protein, at 2,643,151 to 2,643,702
_RS12745
Group
Condition
ABID97
_RS12725
ABID97
_RS12730
ABID97
_RS12735
ABID97
_RS12740
ABID97
_RS12745
phage
V2_100
-0.8
N.D.
+0.7
-0.7
-1.7
carbon source
L-Alanine (C)
-0.8
N.D.
-0.0
-0.6
-0.3
carbon source
L-Fucose (C)
-0.3
N.D.
-0.4
-0.2
-0.5
carbon source
propionate (C)
-1.1
N.D.
+0.0
+0.1
-0.1
carbon source
D-Ribose (C)
-0.9
N.D.
-0.5
+0.3
+0.2
carbon source
L-Alanine (C)
+0.4
N.D.
-0.0
-0.8
-0.3
carbon source
D-Serine (C)
-0.9
N.D.
-0.1
+0.0
+0.4
carbon source
D-Xylose (C)
-0.2
N.D.
-0.6
+0.5
-0.2
carbon source
D-Glucose (C)
-0.6
N.D.
-0.3
-0.1
+0.6
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
N.D.
+0.3
-0.7
-0.2
carbon source
Ethanol (C)
-0.8
N.D.
-0.0
-0.2
+0.7
carbon source
Ethanol (C)
-0.8
N.D.
-0.3
+0.1
+0.7
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.7
N.D.
-0.5
-0.3
-0.0
carbon source
L-Glutamine (C)
-0.1
N.D.
-0.5
-0.1
+0.6
carbon source
D,L-Malic Acid (C)
-0.5
N.D.
+0.1
-0.3
+0.7
carbon source
2-Deoxy-D-Ribose (C)
-0.5
N.D.
-0.2
+0.1
+0.7
carbon source
L-Phenylalanine (C)
+0.3
N.D.
+0.4
-0.1
-0.4
phage
V1_10
+0.4
N.D.
+0.2
+0.2
-0.5
carbon source
L-Leucine (C)
+0.4
N.D.
-0.4
-0.0
+0.4
carbon source
L-Glutamic (C)
+0.0
N.D.
+0.2
-0.5
+0.7
carbon source
D-Glucuronic Acid (C)
-0.1
N.D.
-0.2
-0.1
+1.0
control
NP
-0.2
N.D.
+0.1
-0.1
+1.0
carbon source
D-Xylose (C)
-0.1
N.D.
-0.0
-0.2
+1.2
carbon source
Glucuronamide (C)
+0.6
N.D.
+0.3
-0.4
+0.4
carbon source
Gly-Glu (C)
+0.3
N.D.
-0.1
+0.2
+0.6
carbon source
L-Arabinose (C)
+0.5
N.D.
+0.2
-0.0
+0.5
carbon source
L-Leucine (C)
+0.4
N.D.
+0.2
-0.0
+0.8
carbon source
L-Phenylalanine (C)
+0.4
N.D.
+0.4
-0.0
+0.6
carbon source
Tween 20 (C)
+0.3
N.D.
-0.1
+0.2
+1.0
carbon source
D-Serine (C)
+0.4
N.D.
-0.2
+0.1
+1.3
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