Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS12595 and ABID97_RS12600 are separated by 94 nucleotidesABID97_RS12600 and ABID97_RS12605 are separated by 299 nucleotidesABID97_RS12605 and ABID97_RS12610 are separated by 133 nucleotidesABID97_RS12610 and ABID97_RS12615 overlap by 22 nucleotides ABID97_RS12595: ABID97_RS12595 - formaldehyde-activating enzyme, at 2,615,132 to 2,615,644 _RS12595 ABID97_RS12600: ABID97_RS12600 - dihydroneopterin aldolase, at 2,615,739 to 2,616,170 _RS12600 ABID97_RS12605: ABID97_RS12605 - sigma-54-dependent Fis family transcriptional regulator, at 2,616,470 to 2,618,515 _RS12605 ABID97_RS12610: ABID97_RS12610 - flavoprotein, at 2,618,649 to 2,619,194 _RS12610 ABID97_RS12615: ABID97_RS12615 - DUF6513 domain-containing protein, at 2,619,173 to 2,620,657 _RS12615
Group Condition ABID97_RS12595 ABID97_RS12600 ABID97_RS12605 ABID97_RS12610 ABID97_RS12615
carbon source L-Phenylalanine (C) N.D. N.D. +0.9 -2.6 -0.7
carbon source L-Phenylalanine (C) N.D. N.D. +1.3 -2.7 -0.6
carbon source L-Fucose (C) N.D. N.D. -0.8 -0.9 +0.1
carbon source D-Glucuronic Acid (C) N.D. N.D. -0.7 -0.3 -0.3
carbon source acetate (C) N.D. N.D. -0.9 -0.3 -0.0
carbon source L-Glutamic (C) N.D. N.D. -0.6 -0.4 +0.0
carbon source butyrate (C) N.D. N.D. -0.8 +0.2 -0.3
carbon source Glycolic Acid (C) N.D. N.D. -1.0 +0.0 +0.2
carbon source D-Sorbitol (C) N.D. N.D. -0.7 -0.4 +0.4
phage V1_10 N.D. N.D. +0.3 -0.5 -0.4
carbon source a-Ketoglutaric (C) N.D. N.D. -0.3 +0.2 -0.5
carbon source L-Lactate (C) N.D. N.D. -0.8 -0.2 +0.4
carbon source L-Proline (C) N.D. N.D. -0.7 +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.4 -0.3 -0.5
carbon source acetate (C) N.D. N.D. -0.7 -0.0 +0.4
carbon source pyruvate (C) N.D. N.D. -0.6 +0.1 +0.3
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. +0.1 +0.5 -0.5
carbon source propionate (C) N.D. N.D. +0.5 +0.1 -0.5
carbon source propionate (C) N.D. N.D. -0.3 -0.3 +0.7
phage V2_10 N.D. N.D. +0.2 +0.3 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.4 -0.2 +0.8
carbon source Glycolic Acid (C) N.D. N.D. -0.3 +0.5 +0.2
carbon source L-Leucine (C) N.D. N.D. +0.1 -0.3 +0.6
carbon source L-Glutamine (C) N.D. N.D. -0.4 +0.4 +0.5
carbon source Ethanol (C) N.D. N.D. -0.3 +0.3 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.6 -0.3 +0.3
carbon source L-tyrosine (C) N.D. N.D. +0.4 +0.5 -0.2
carbon source L-Leucine (C) N.D. N.D. +0.1 +0.3 +0.6
r2a outgrowth control R2A outgrowth control N.D. N.D. +0.4 +0.4 +0.1
carbon source Glucuronamide (C) N.D. N.D. +0.6 +0.5 +0.0
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