Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS12555 and ABID97_RS12560 are separated by 68 nucleotidesABID97_RS12560 and ABID97_RS12565 are separated by 446 nucleotidesABID97_RS12565 and ABID97_RS12570 are separated by 48 nucleotidesABID97_RS12570 and ABID97_RS12575 are separated by 15 nucleotides ABID97_RS12555: ABID97_RS12555 - MarR family transcriptional regulator, at 2,606,520 to 2,606,996 _RS12555 ABID97_RS12560: ABID97_RS12560 - hypothetical protein, at 2,607,065 to 2,608,540 _RS12560 ABID97_RS12565: ABID97_RS12565 - beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein, at 2,608,987 to 2,610,036 _RS12565 ABID97_RS12570: ABID97_RS12570 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 2,610,085 to 2,611,002 _RS12570 ABID97_RS12575: ABID97_RS12575 - ATP-grasp domain-containing protein, at 2,611,018 to 2,612,166 _RS12575
Group Condition ABID97_RS12555 ABID97_RS12560 ABID97_RS12565 ABID97_RS12570 ABID97_RS12575
carbon source Glucuronamide (C) -0.2 +0.1 N.D. +0.5 -3.4
carbon source 2-Deoxy-D-Ribose (C) -0.5 +0.2 N.D. -0.2 -2.5
carbon source butyrate (C) -0.3 -0.4 N.D. +0.4 -2.3
carbon source D-Ribose (C) -0.3 -0.0 N.D. +0.0 -2.3
carbon source L-Arabinose (C) -0.3 +0.0 N.D. -0.3 -2.0
carbon source L-tyrosine (C) -0.3 -0.4 N.D. -0.7 -1.1
carbon source L-Glutamic (C) -0.2 +0.0 N.D. -0.2 -1.9
carbon source L-Tryptophan (C) -0.2 +0.2 N.D. -0.4 -1.8
carbon source D-Ribose (C) -0.0 -0.2 N.D. -0.1 -1.7
carbon source succinate (C) -0.4 +0.0 N.D. -0.1 -1.5
carbon source acetate (C) -0.0 -0.2 N.D. +0.0 -1.8
carbon source L-Arabinose (C) -0.3 -0.3 N.D. +0.6 -1.9
carbon source Adenine (C) -0.2 +0.0 N.D. -0.5 -1.3
carbon source L-Alanine (C) -0.1 +0.5 N.D. -0.1 -2.1
carbon source L-Malic (C) -0.0 +0.2 N.D. -0.4 -1.5
carbon source D-Gluconic Acid (C) -0.0 +0.1 N.D. +0.3 -1.9
carbon source pyruvate (C) -0.3 +0.5 N.D. -0.0 -1.6
carbon source D-Sorbitol (C) +0.3 -0.3 N.D. +0.2 -1.5
carbon source L-Fucose (C) -0.1 -1.2 N.D. +0.5 -0.2
carbon source D-Serine (C) -0.3 +0.4 N.D. +0.2 -1.1
phage V2_100 -0.3 -0.7 N.D. -0.3 +0.6
r2a outgrowth control R2A outgrowth control +0.4 -0.6 N.D. +0.3 -0.6
carbon source L-Alanine (C) -0.1 +0.2 N.D. +0.5 -1.1
carbon source Ethanol (C) -0.3 +0.9 N.D. -0.2 -0.8
carbon source D-Glucose (C) +0.2 +0.7 N.D. -0.3 -0.9
carbon source L-Histidine (C) -0.1 +0.6 N.D. +0.7 -1.2
carbon source D-Glucuronic Acid (C) -0.2 +0.6 N.D. +0.3 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 -0.5 N.D. +0.0 -0.2
phage V2_10 -0.4 -0.5 N.D. +0.2 +1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.5 +0.7 N.D. -0.6 +0.6
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