Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS12515 and ABID97_RS12520 are separated by 89 nucleotidesABID97_RS12520 and ABID97_RS12525 are separated by 5 nucleotidesABID97_RS12525 and ABID97_RS12530 are separated by 43 nucleotidesABID97_RS12530 and ABID97_RS12535 are separated by 2 nucleotides ABID97_RS12515: ABID97_RS12515 - DUF5801 repeats-in-toxin domain-containing protein, at 2,592,839 to 2,596,519 _RS12515 ABID97_RS12520: ABID97_RS12520 - type I secretion system permease/ATPase, at 2,596,609 to 2,598,393 _RS12520 ABID97_RS12525: ABID97_RS12525 - type I secretion system permease/ATPase, at 2,598,399 to 2,600,123 _RS12525 ABID97_RS12530: ABID97_RS12530 - HlyD family type I secretion periplasmic adaptor subunit, at 2,600,167 to 2,601,540 _RS12530 ABID97_RS12535: ABID97_RS12535 - TolC family outer membrane protein, at 2,601,543 to 2,602,874 _RS12535
Group Condition ABID97_RS12515 ABID97_RS12520 ABID97_RS12525 ABID97_RS12530 ABID97_RS12535
carbon source Tween 20 (C) -0.1 -0.3 -0.0 -0.1 -0.4
carbon source L-Fucose (C) +0.1 -0.6 -0.2 -0.1 +0.0
carbon source D,L-Malic Acid (C) -0.1 -0.2 -0.0 +0.3 -0.8
carbon source D-Gluconic Acid (C) -0.1 -0.2 +0.0 -0.1 -0.4
carbon source L-Glutamine (C) -0.0 -0.3 +0.2 -0.1 -0.5
carbon source casaminos (C) -0.1 -0.3 -0.0 +0.1 -0.5
carbon source Glucuronamide (C) -0.2 +0.3 +0.0 -0.4 -0.5
carbon source L-Histidine (C) -0.0 -0.5 +0.3 -0.1 -0.3
carbon source L-Asparagine (C) -0.1 -0.7 +0.3 +0.1 -0.2
carbon source D-Arabinose (C) +0.0 -0.2 +0.3 -0.2 -0.4
carbon source D,L-Malic Acid (C) -0.1 -0.6 +0.4 -0.4 +0.1
carbon source L-Leucine (C) -0.1 -0.1 -0.1 +0.2 -0.3
carbon source Adenine (C) -0.0 -0.3 +0.2 -0.1 -0.3
carbon source L-Leucine (C) -0.0 -0.3 +0.3 +0.1 -0.4
carbon source L-Malic (C) +0.0 -0.3 +0.1 +0.2 -0.3
carbon source Ethanol (C) +0.1 -0.5 +0.1 +0.2 +0.0
carbon source D-Arabinose (C) +0.1 +0.2 -0.2 +0.2 -0.4
carbon source L-Alanine (C) +0.1 -0.2 -0.1 +0.5 -0.1
carbon source a-Ketoglutaric (C) +0.2 -0.2 +0.3 +0.0 -0.2
carbon source Glycerol (C) +0.1 -0.3 +0.3 +0.2 -0.1
carbon source propionate (C) +0.3 -0.1 +0.3 +0.2 -0.5
carbon source propionate (C) +0.0 -0.4 +0.1 +0.4 +0.2
carbon source D-Ribose (C) -0.1 +0.2 +0.0 +0.1 +0.4
carbon source D-Lactate (C) +0.1 -0.1 +0.3 +0.3 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.1 +0.3 +0.4 +0.1
r2a outgrowth control R2A outgrowth control +0.1 +0.2 +0.3 +0.3 +0.0
carbon source acetate (C) -0.0 +0.3 +0.5 +0.2 +0.1
carbon source Formate (C) +0.1 +0.1 +0.5 +0.3 +0.0
carbon source 4-Hydroxybenzoic Acid (C) +0.0 +0.1 +0.0 +0.4 +0.5
carbon source butyrate (C) -0.1 +0.4 +0.3 +0.2 +0.2
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