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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS12460 and ABID97_RS12465 are separated by 127 nucleotides
ABID97_RS12465 and ABID97_RS12470 are separated by 82 nucleotides
ABID97_RS12470 and ABID97_RS12475 are separated by 18 nucleotides
ABID97_RS12475 and ABID97_RS12480 are separated by 409 nucleotides
ABID97_RS12460: ABID97_RS12460 - acetoacetyl-CoA reductase, at 2,581,200 to 2,581,937
_RS12460
ABID97_RS12465: ABID97_RS12465 - dicarboxylate/amino acid:cation symporter, at 2,582,065 to 2,583,408
_RS12465
ABID97_RS12470: ABID97_RS12470 - YbaL family putative K(+) efflux transporter, at 2,583,491 to 2,585,194
_RS12470
ABID97_RS12475: ABID97_RS12475 - hypothetical protein, at 2,585,213 to 2,585,617
_RS12475
ABID97_RS12480: ABID97_RS12480 - homoserine dehydrogenase, at 2,586,027 to 2,587,388
_RS12480
Group
Condition
ABID97
_RS12460
ABID97
_RS12465
ABID97
_RS12470
ABID97
_RS12475
ABID97
_RS12480
carbon source
L-Threonine (C)
-0.6
+0.0
+0.7
+0.9
-5.4
carbon source
D,L-Lactate (C)
-3.2
-0.0
-0.1
+0.2
-0.0
carbon source
L-Threonine (C)
-0.2
+0.5
+0.8
+0.5
-4.7
carbon source
D-Lactate (C)
-3.0
+0.0
-0.0
+0.1
-0.2
carbon source
a-Ketoglutaric (C)
+3.0
-2.2
+0.6
-0.3
-0.2
carbon source
L-Alanine (C)
+2.0
+0.2
-0.2
-0.5
-0.3
phage
V2_100
+2.0
+0.6
-0.6
-0.2
-0.4
carbon source
L-Malic (C)
+2.4
-0.6
-0.1
-0.1
-0.1
carbon source
a-Ketoglutaric (C)
+2.8
-2.0
+0.5
+0.1
+0.3
carbon source
L-Tryptophan (C)
+2.9
-0.1
-0.1
-0.5
-0.2
carbon source
2-Deoxy-D-Ribose (C)
+2.8
-0.2
+0.0
-0.3
-0.2
carbon source
Gly-Glu (C)
+3.4
-0.0
-0.2
-0.3
-0.3
carbon source
Glucuronamide (C)
+3.8
-0.3
-0.3
+0.0
-0.3
carbon source
L-Proline (C)
+3.9
-0.2
-0.4
-0.2
-0.2
carbon source
L-Asparagine (C)
+3.1
-0.2
+0.2
-0.1
-0.1
carbon source
L-Leucine (C)
+3.4
-0.2
-0.2
-0.0
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
+3.7
-0.2
-0.1
-0.3
-0.2
carbon source
L-Tryptophan (C)
+3.3
+0.0
-0.0
-0.1
-0.2
carbon source
Gly-Glu (C)
+3.6
+0.1
-0.3
-0.1
-0.2
carbon source
L-Leucine (C)
+3.4
+0.2
-0.1
-0.4
+0.0
carbon source
Glucuronamide (C)
+3.4
+0.2
-0.1
-0.0
-0.2
carbon source
Glycolic Acid (C)
+3.6
-0.3
+0.1
-0.1
+0.3
carbon source
D-Glucuronic Acid (C)
+4.5
+0.1
-0.1
-0.2
-0.3
carbon source
D-Arabinose (C)
+4.3
-0.1
-0.2
+0.2
-0.1
carbon source
L-Proline (C)
+4.2
+0.1
+0.2
-0.2
-0.2
carbon source
L-Histidine (C)
+4.6
-0.0
-0.0
-0.1
-0.1
carbon source
D-Arabinose (C)
+4.4
-0.1
+0.2
-0.0
-0.2
carbon source
L-Histidine (C)
+4.9
-0.1
+0.4
+0.1
+0.2
carbon source
butyrate (C)
+7.9
-0.0
-0.1
+0.2
-0.2
carbon source
butyrate (C)
+8.5
-0.2
+0.3
+0.2
-0.2
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