Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS12370 and ABID97_RS12375 are separated by 168 nucleotidesABID97_RS12375 and ABID97_RS12380 are separated by 13 nucleotidesABID97_RS12380 and ABID97_RS12385 are separated by 108 nucleotidesABID97_RS12385 and ABID97_RS12390 are separated by 5 nucleotides ABID97_RS12370: ABID97_RS12370 - saccharopine dehydrogenase C-terminal domain-containing protein, at 2,563,678 to 2,565,102 _RS12370 ABID97_RS12375: ABID97_RS12375 - phospholipase D family protein, at 2,565,271 to 2,566,911 _RS12375 ABID97_RS12380: ABID97_RS12380 - peptidoglycan DD-metalloendopeptidase family protein, at 2,566,925 to 2,567,428 _RS12380 ABID97_RS12385: ABID97_RS12385 - CreA family protein, at 2,567,537 to 2,568,043 _RS12385 ABID97_RS12390: ABID97_RS12390 - NUDIX hydrolase, at 2,568,049 to 2,568,600 _RS12390
Group Condition ABID97_RS12370 ABID97_RS12375 ABID97_RS12380 ABID97_RS12385 ABID97_RS12390
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.1 -0.4 -0.1 N.D.
carbon source Tween 20 (C) -0.2 -0.1 -0.2 -0.3 N.D.
plant outgrowth control Plant outgrowth control -0.3 -0.1 -0.1 -0.3 N.D.
carbon source propionate (C) -0.3 -0.0 -0.2 -0.1 N.D.
carbon source L-tyrosine (C) +0.1 -0.2 -0.4 -0.1 N.D.
carbon source L-Histidine (C) -0.3 -0.1 -0.1 +0.1 N.D.
carbon source D,L-Malic Acid (C) -0.1 -0.3 +0.2 -0.2 N.D.
carbon source D-Serine (C) -0.2 -0.3 +0.3 -0.1 N.D.
r2a outgrowth control R2A outgrowth control -0.3 -0.0 -0.2 +0.2 N.D.
carbon source L-Alanine (C) -0.2 -0.3 +0.3 +0.0 N.D.
carbon source D,L-Malic Acid (C) +0.1 +0.0 -0.4 +0.2 N.D.
phage V1_1 -0.2 +0.2 -0.2 +0.2 N.D.
phage V2_100 -0.3 +0.1 -0.1 +0.3 N.D.
r2a outgrowth control R2A outgrowth control +0.2 -0.1 +0.2 -0.2 N.D.
carbon source Glycolic Acid (C) -0.1 -0.1 +0.2 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.1 -0.1 +0.3 N.D.
carbon source acetate (C) -0.3 -0.1 +0.5 +0.2 N.D.
carbon source D-Mannose (C) -0.0 +0.0 +0.4 -0.2 N.D.
carbon source Glycerol (C) -0.2 -0.0 +0.4 +0.2 N.D.
carbon source propionate (C) -0.2 -0.0 +0.5 +0.1 N.D.
carbon source butyrate (C) +0.0 -0.2 +0.0 +0.4 N.D.
carbon source L-Tryptophan (C) +0.1 -0.2 +0.3 +0.3 N.D.
carbon source D-Fructose (C) +0.1 -0.1 +0.4 +0.0 N.D.
carbon source D-Galactose (C) +0.1 -0.1 +0.1 +0.5 N.D.
carbon source L-tyrosine (C) -0.2 +0.3 +0.3 +0.2 N.D.
carbon source D-Glucose (C) -0.0 +0.1 +0.1 +0.4 N.D.
carbon source Glucuronamide (C) +0.2 -0.1 +0.4 +0.0 N.D.
carbon source L-Phenylalanine (C) +0.1 -0.0 +0.5 +0.2 N.D.
carbon source D-Arabinose (C) -0.0 -0.0 +0.3 +0.5 N.D.
carbon source butyrate (C) -0.0 +0.1 +0.6 +0.4 N.D.
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ABID97_RS12375
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ABID97_RS12390
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