Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS12255 and ABID97_RS12260 are separated by 145 nucleotidesABID97_RS12260 and ABID97_RS12265 are separated by 24 nucleotidesABID97_RS12265 and ABID97_RS12270 are separated by 72 nucleotidesABID97_RS12270 and ABID97_RS12275 are separated by 10 nucleotides ABID97_RS12255: ABID97_RS12255 - PRC-barrel domain-containing protein, at 2,544,014 to 2,544,352 _RS12255 ABID97_RS12260: ABID97_RS12260 - hypothetical protein, at 2,544,498 to 2,546,090 _RS12260 ABID97_RS12265: ABID97_RS12265 - helix-turn-helix domain-containing protein, at 2,546,115 to 2,546,573 _RS12265 ABID97_RS12270: ABID97_RS12270 - class I SAM-dependent methyltransferase, at 2,546,646 to 2,547,491 _RS12270 ABID97_RS12275: ABID97_RS12275 - cytochrome c oxidase subunit I, at 2,547,502 to 2,550,030 _RS12275
Group Condition ABID97_RS12255 ABID97_RS12260 ABID97_RS12265 ABID97_RS12270 ABID97_RS12275
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 +0.0 N.D. N.D. -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.4 N.D. N.D. -0.0
control NP -0.6 -0.2 N.D. N.D. -0.0
phage V2_1 -0.5 -0.2 N.D. N.D. +0.1
carbon source L-Phenylalanine (C) +0.3 -0.3 N.D. N.D. -0.1
carbon source D-Arabinose (C) +0.4 -0.3 N.D. N.D. -0.1
carbon source L-Glutamine (C) +0.5 -0.2 N.D. N.D. -0.2
carbon source D-Glucose (C) +0.5 -0.2 N.D. N.D. -0.3
carbon source L-tyrosine (C) +0.9 -0.4 N.D. N.D. -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.2 N.D. N.D. +0.1
carbon source L-Glutamine (C) +0.6 -0.1 N.D. N.D. -0.1
carbon source L-Histidine (C) +0.7 +0.0 N.D. N.D. -0.1
carbon source L-Phenylalanine (C) +0.7 -0.1 N.D. N.D. +0.1
carbon source D-Lactate (C) +0.5 +0.3 N.D. N.D. -0.1
carbon source L-Threonine (C) +0.7 +0.1 N.D. N.D. -0.0
carbon source Formate (C) +0.9 +0.1 N.D. N.D. -0.2
carbon source L-Glutamic (C) +0.7 -0.0 N.D. N.D. +0.1
carbon source D-Serine (C) +0.9 -0.0 N.D. N.D. -0.1
carbon source butyrate (C) +0.4 +0.3 N.D. N.D. +0.1
carbon source D-Galactose (C) +0.4 +0.3 N.D. N.D. +0.2
carbon source butyrate (C) +0.6 +0.3 N.D. N.D. -0.0
carbon source D-Xylose (C) +0.7 +0.1 N.D. N.D. +0.1
phage V2_100 +0.9 -0.2 N.D. N.D. +0.2
carbon source L-Threonine (C) +0.9 +0.1 N.D. N.D. -0.0
carbon source 2-Deoxy-D-Ribose (C) +0.9 +0.0 N.D. N.D. -0.0
carbon source Glucuronamide (C) +0.6 +0.3 N.D. N.D. +0.1
carbon source D-Fructose (C) +0.9 +0.0 N.D. N.D. +0.1
carbon source Ethanol (C) +0.6 +0.3 N.D. N.D. +0.1
carbon source L-Histidine (C) +0.9 +0.2 N.D. N.D. +0.1
carbon source Glucuronamide (C) +0.8 +0.2 N.D. N.D. +0.3
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ABID97_RS12255
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ABID97_RS12260
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ABID97_RS12270
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ABID97_RS12275
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