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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS12205 and ABID97_RS12210 overlap by 4 nucleotides
ABID97_RS12210 and ABID97_RS12215 are separated by 213 nucleotides
ABID97_RS12215 and ABID97_RS12220 are separated by 22 nucleotides
ABID97_RS12220 and ABID97_RS12225 are separated by 331 nucleotides
ABID97_RS12205: ABID97_RS12205 - hypothetical protein, at 2,539,069 to 2,539,302
_RS12205
ABID97_RS12210: ABID97_RS12210 - hypothetical protein, at 2,539,299 to 2,539,667
_RS12210
ABID97_RS12215: ABID97_RS12215 - hypothetical protein, at 2,539,881 to 2,540,504
_RS12215
ABID97_RS12220: ABID97_RS12220 - hypothetical protein, at 2,540,527 to 2,540,832
_RS12220
ABID97_RS12225: ABID97_RS12225 - hypothetical protein, at 2,541,164 to 2,541,457
_RS12225
Group
Condition
ABID97
_RS12205
ABID97
_RS12210
ABID97
_RS12215
ABID97
_RS12220
ABID97
_RS12225
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
-0.7
-1.5
-1.6
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
-1.0
-1.2
-0.4
N.D.
phage
V1_1
N.D.
-0.2
-0.7
-0.7
N.D.
phage
V2_1
N.D.
-0.3
-0.5
-0.6
N.D.
phage
V2_1
N.D.
-0.1
-0.7
-0.7
N.D.
phage
V1_10
N.D.
-0.6
-0.4
-0.3
N.D.
phage
V1_1
N.D.
-0.1
-0.4
-0.5
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
-0.8
+0.0
-0.2
N.D.
control
NP
N.D.
-0.0
-0.6
-0.4
N.D.
phage
V2_10
N.D.
-0.5
-0.2
-0.3
N.D.
carbon source
L-Glutamine (C)
N.D.
-0.2
-0.2
-0.5
N.D.
phage
V2_10
N.D.
-0.1
-0.5
-0.2
N.D.
phage
V1_10
N.D.
-0.3
-0.0
-0.5
N.D.
carbon source
Glycerol (C)
N.D.
+0.0
-0.6
-0.2
N.D.
carbon source
D-Ribose (C)
N.D.
+0.3
-0.5
-0.5
N.D.
carbon source
L-Malic (C)
N.D.
+0.3
-0.3
-0.4
N.D.
carbon source
D-Glucose (C)
N.D.
+0.5
-0.3
-0.3
N.D.
carbon source
Glycolic Acid (C)
N.D.
+0.3
+0.2
-0.5
N.D.
carbon source
Glycolic Acid (C)
N.D.
+0.1
+0.3
-0.4
N.D.
r2a outgrowth control
R2A outgrowth control
N.D.
+0.2
+0.5
-0.5
N.D.
carbon source
Fumarate (C)
N.D.
+0.5
-0.4
+0.2
N.D.
carbon source
butyrate (C)
N.D.
+0.0
-0.3
+0.6
N.D.
carbon source
propionate (C)
N.D.
-0.2
+0.6
-0.0
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.3
-0.3
+0.4
N.D.
carbon source
D-Arabinose (C)
N.D.
+0.3
+0.4
-0.2
N.D.
carbon source
2-Deoxy-D-Ribose (C)
N.D.
+0.3
+0.5
-0.2
N.D.
phage
V2_100
N.D.
+0.6
+0.4
-0.2
N.D.
carbon source
L-Alanine (C)
N.D.
-0.4
+0.5
+0.8
N.D.
carbon source
L-Fucose (C)
N.D.
+0.1
+0.3
+0.6
N.D.
carbon source
Adenine (C)
N.D.
+0.2
+0.4
+0.5
N.D.
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