Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS11945 and ABID97_RS11950 are separated by 205 nucleotidesABID97_RS11950 and ABID97_RS11955 are separated by 139 nucleotidesABID97_RS11955 and ABID97_RS11960 overlap by 31 nucleotidesABID97_RS11960 and ABID97_RS11965 are separated by 147 nucleotides ABID97_RS11945: ABID97_RS11945 - RNA polymerase factor sigma-54, at 2,464,414 to 2,465,859 _RS11945 ABID97_RS11950: ABID97_RS11950 - histidine kinase dimerization/phospho-acceptor domain-containing protein, at 2,466,065 to 2,466,427 _RS11950 ABID97_RS11955: ABID97_RS11955 - sigma-54 dependent transcriptional regulator, at 2,466,567 to 2,468,009 _RS11955 ABID97_RS11960: ABID97_RS11960 - hypothetical protein, at 2,467,979 to 2,468,215 _RS11960 ABID97_RS11965: ABID97_RS11965 - PAS domain S-box protein, at 2,468,363 to 2,472,973 _RS11965
Group Condition ABID97_RS11945 ABID97_RS11950 ABID97_RS11955 ABID97_RS11960 ABID97_RS11965
carbon source L-Histidine (C) -0.5 N.D. -1.4 -0.4 -0.1
carbon source L-Lactate (C) -0.3 N.D. +0.8 -2.9 +0.1
carbon source D-Gluconic Acid (C) -0.3 N.D. -0.1 -1.7 +0.1
carbon source acetate (C) -0.8 N.D. +0.1 -1.3 +0.1
carbon source casaminos (C) -0.2 N.D. +0.1 -1.4 -0.2
carbon source L-tyrosine (C) -0.8 N.D. +0.3 -1.4 +0.2
carbon source D-Glucose (C) -0.2 N.D. -0.6 -1.0 +0.2
carbon source D-Galactose (C) +0.2 N.D. -0.2 -1.8 +0.1
carbon source butyrate (C) -0.2 N.D. +0.0 -1.3 -0.0
carbon source L-Proline (C) -0.7 N.D. -0.4 -0.5 +0.0
carbon source L-Glutamic (C) -0.4 N.D. +0.5 -1.3 +0.0
carbon source L-Arabinose (C) +0.0 N.D. -0.9 -0.4 +0.2
phage V2_10 -0.4 N.D. -0.7 +0.2 -0.2
carbon source D-Fructose (C) -0.4 N.D. +0.1 -0.7 +0.3
phage V2_10 -0.3 N.D. -1.1 +0.8 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 N.D. +0.9 -0.4 -0.4
carbon source Formate (C) -0.6 N.D. +0.5 -0.3 +0.1
control NP -0.5 N.D. -0.4 +0.9 -0.1
carbon source butyrate (C) +0.7 N.D. +0.3 -0.9 -0.3
carbon source propionate (C) -0.4 N.D. +0.8 -0.6 +0.1
carbon source D,L-Lactate (C) -0.0 N.D. +0.5 -0.7 +0.2
carbon source Glycolic Acid (C) -0.0 N.D. +0.6 -0.8 +0.3
carbon source L-Tryptophan (C) -0.3 N.D. -0.6 +0.8 +0.3
carbon source pyruvate (C) -0.2 N.D. +0.9 -0.7 +0.2
carbon source D-Arabinose (C) -0.2 N.D. +0.8 -0.5 +0.2
carbon source L-Glutamine (C) +0.2 N.D. +0.9 -0.9 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 N.D. -0.2 +0.8 -0.4
carbon source Glucuronamide (C) +0.7 N.D. +0.5 -0.3 -0.1
plant outgrowth control Plant outgrowth control -0.4 N.D. -0.2 +1.3 +0.0
carbon source D,L-Malic Acid (C) +0.7 N.D. +1.0 +0.1 +0.1
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