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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS11900 and ABID97_RS11905 overlap by 4 nucleotides
ABID97_RS11905 and ABID97_RS11910 overlap by 4 nucleotides
ABID97_RS11910 and ABID97_RS11915 are separated by 19 nucleotides
ABID97_RS11915 and ABID97_RS11920 overlap by 14 nucleotides
ABID97_RS11900: ABID97_RS11900 - glycosyltransferase, at 2,458,083 to 2,459,204
_RS11900
ABID97_RS11905: ABID97_RS11905 - glycosyltransferase, at 2,459,201 to 2,460,310
_RS11905
ABID97_RS11910: ABID97_RS11910 - glycosyltransferase, at 2,460,307 to 2,461,401
_RS11910
ABID97_RS11915: ABID97_RS11915 - TIGR04290 family methyltransferase, at 2,461,421 to 2,462,239
_RS11915
ABID97_RS11920: ABID97_RS11920 - DUF1003 domain-containing protein, at 2,462,226 to 2,462,774
_RS11920
Group
Condition
ABID97
_RS11900
ABID97
_RS11905
ABID97
_RS11910
ABID97
_RS11915
ABID97
_RS11920
plant outgrowth control
Plant outgrowth control
-0.5
-0.1
+0.3
-0.5
-1.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
+0.0
-0.4
-0.0
-1.2
carbon source
L-tyrosine (C)
+0.3
+0.2
-0.5
-0.8
-0.9
carbon source
D-Arabinose (C)
-0.4
-0.2
-0.1
+0.2
-0.8
carbon source
Glucuronamide (C)
+0.5
-0.2
-0.4
-0.7
-0.4
phage
V1_10
-0.4
-0.6
+0.3
-0.3
-0.2
carbon source
Ethanol (C)
+0.0
+0.5
-0.1
-0.4
-1.0
carbon source
4-Hydroxybenzoic Acid (C)
-0.5
-0.5
+0.4
+0.3
-0.8
carbon source
D-Galactose (C)
+0.1
+0.5
-0.5
-0.1
-1.0
carbon source
L-Leucine (C)
+0.1
-0.4
-0.1
+0.5
-0.6
carbon source
propionate (C)
-0.1
+0.1
+0.5
+0.3
-1.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.2
-0.2
+0.4
+0.5
-0.9
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.1
-0.1
+0.1
-0.9
+0.4
carbon source
D-Arabinose (C)
-0.0
+0.5
-0.4
+0.3
-0.6
carbon source
L-Alanine (C)
-0.1
+0.3
-0.0
+0.7
-0.9
carbon source
D,L-Malic Acid (C)
-0.0
-0.2
-0.3
+1.3
-0.8
carbon source
Ethanol (C)
-0.1
+0.4
+0.1
+0.6
-0.7
r2a outgrowth control
R2A outgrowth control
+0.2
-0.3
+0.4
-0.3
+0.4
phage
V2_100
-0.1
+0.2
+0.6
-0.8
+0.6
carbon source
L-Glutamine (C)
-0.2
+1.0
+0.0
+0.6
-0.8
carbon source
L-Tryptophan (C)
+0.1
+0.3
-0.1
+0.8
-0.4
carbon source
L-Threonine (C)
+0.1
+0.5
+0.1
+0.7
-0.7
carbon source
L-Histidine (C)
-0.4
+0.3
+0.2
+0.7
+0.0
carbon source
Tween 20 (C)
-0.1
+0.7
-0.2
+0.6
-0.1
carbon source
D-Gluconic Acid (C)
+0.3
+0.2
-0.3
+0.3
+0.5
carbon source
L-Malic (C)
+0.6
+0.2
+0.2
+0.4
-0.2
carbon source
casaminos (C)
-0.3
+0.8
+0.1
-0.0
+0.8
carbon source
D-Serine (C)
-0.2
+0.2
+0.6
+0.4
+0.3
carbon source
D-Sorbitol (C)
-0.2
+0.6
+0.0
+0.7
+0.4
carbon source
L-Glutamic (C)
-0.0
+0.4
+0.3
+0.3
+0.6
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