Fitness for 5 genes in Variovorax sp. OAS795

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 111 experiments or choose conditions or try the comparative fitness browser

500 ntABID97_RS11870 and ABID97_RS11875 are separated by 296 nucleotidesABID97_RS11875 and ABID97_RS11880 overlap by 4 nucleotidesABID97_RS11880 and ABID97_RS11885 are separated by 2 nucleotidesABID97_RS11885 and ABID97_RS11890 overlap by 4 nucleotides ABID97_RS11870: ABID97_RS11870 - inositol-3-phosphate synthase, at 2,451,244 to 2,452,395 _RS11870 ABID97_RS11875: ABID97_RS11875 - NAD-dependent epimerase/dehydratase family protein, at 2,452,692 to 2,453,810 _RS11875 ABID97_RS11880: ABID97_RS11880 - NAD-dependent epimerase/dehydratase family protein, at 2,453,807 to 2,454,937 _RS11880 ABID97_RS11885: ABID97_RS11885 - zinc-binding dehydrogenase, at 2,454,940 to 2,455,893 _RS11885 ABID97_RS11890: ABID97_RS11890 - Gfo/Idh/MocA family oxidoreductase, at 2,455,890 to 2,456,954 _RS11890
Group Condition ABID97_RS11870 ABID97_RS11875 ABID97_RS11880 ABID97_RS11885 ABID97_RS11890
carbon source L-tyrosine (C) N.D. -0.8 -2.5 +0.0 +0.4
carbon source L-Alanine (C) N.D. -0.2 +0.3 +0.2 -2.0
carbon source D-Arabinose (C) N.D. -0.2 -0.7 +0.2 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.0 -1.4 +0.0 +0.2
carbon source propionate (C) N.D. -0.6 +0.2 +0.1 -0.6
phage V2_10 N.D. -0.7 +0.3 -0.0 -0.5
carbon source L-Arabinose (C) N.D. +0.5 -0.9 +0.1 -0.5
carbon source D-Sorbitol (C) N.D. +0.2 -0.5 -0.1 -0.3
carbon source Glycolic Acid (C) N.D. +0.0 -0.9 +0.1 +0.1
carbon source L-Histidine (C) N.D. -0.2 -0.3 +0.4 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.2 -0.5 -0.1 +0.5
phage V1_10 N.D. +0.1 +0.3 -0.3 -0.4
carbon source L-Glutamic (C) N.D. -0.1 +0.5 -0.1 -0.6
carbon source L-Lactate (C) N.D. +0.3 -0.6 +0.2 -0.0
carbon source Adenine (C) N.D. +0.3 -0.5 +0.3 -0.3
carbon source D,L-Malic Acid (C) N.D. +0.2 -0.6 -0.3 +0.7
carbon source acetate (C) N.D. -0.2 +0.6 -0.1 -0.4
carbon source L-Histidine (C) N.D. -0.7 +0.6 +0.1 +0.1
carbon source a-Ketoglutaric (C) N.D. +0.1 -0.5 +0.0 +0.5
phage V2_1 N.D. +0.3 +0.4 -0.2 -0.2
carbon source D-Fructose (C) N.D. +0.0 +0.2 +0.4 -0.4
carbon source casaminos (C) N.D. +0.1 -0.4 +0.1 +0.5
carbon source propionate (C) N.D. -0.1 -0.2 +0.1 +0.6
carbon source L-Proline (C) N.D. -0.0 +0.7 -0.2 +0.0
carbon source D-Serine (C) N.D. +0.2 -0.4 +0.2 +0.5
carbon source pyruvate (C) N.D. +0.0 +0.5 -0.2 +0.4
phage V2_100 N.D. -0.8 +0.7 +0.1 +0.7
carbon source D-Xylose (C) N.D. -0.1 +0.6 +0.0 +0.4
carbon source L-Fucose (C) N.D. +0.3 +0.6 -0.1 +0.2
carbon source Glucuronamide (C) N.D. +0.1 +0.9 +0.3 -0.1
remove
ABID97_RS11870
plot		 remove
ABID97_RS11875
plot		 remove
ABID97_RS11880		 remove
ABID97_RS11885
plot		 remove
ABID97_RS11890
plot