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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS11825 and ABID97_RS11830 are separated by 0 nucleotides
ABID97_RS11830 and ABID97_RS11835 are separated by 45 nucleotides
ABID97_RS11835 and ABID97_RS11840 are separated by 174 nucleotides
ABID97_RS11840 and ABID97_RS11845 are separated by 41 nucleotides
ABID97_RS11825: ABID97_RS11825 - DUF2269 domain-containing protein, at 2,443,084 to 2,443,557
_RS11825
ABID97_RS11830: ABID97_RS11830 - hypothetical protein, at 2,443,558 to 2,443,818
_RS11830
ABID97_RS11835: ABID97_RS11835 - ZIP family metal transporter, at 2,443,864 to 2,444,769
_RS11835
ABID97_RS11840: ABID97_RS11840 - PH domain-containing protein, at 2,444,944 to 2,445,363
_RS11840
ABID97_RS11845: ABID97_RS11845 - hypothetical protein, at 2,445,405 to 2,447,153
_RS11845
Group
Condition
ABID97
_RS11825
ABID97
_RS11830
ABID97
_RS11835
ABID97
_RS11840
ABID97
_RS11845
carbon source
L-tyrosine (C)
-1.0
N.D.
N.D.
N.D.
N.D.
plant outgrowth control
Plant outgrowth control
-0.6
N.D.
N.D.
N.D.
N.D.
phage
V2_1
-0.5
N.D.
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
-0.5
N.D.
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
D-Ribose (C)
-0.4
N.D.
N.D.
N.D.
N.D.
phage
V1_10
-0.4
N.D.
N.D.
N.D.
N.D.
phage
V2_1
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
Adenine (C)
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
-0.3
N.D.
N.D.
N.D.
N.D.
carbon source
D-Mannose (C)
+0.3
N.D.
N.D.
N.D.
N.D.
carbon source
Glycerol (C)
+0.3
N.D.
N.D.
N.D.
N.D.
carbon source
Glycolic Acid (C)
+0.3
N.D.
N.D.
N.D.
N.D.
r2a outgrowth control
R2A outgrowth control
+0.3
N.D.
N.D.
N.D.
N.D.
carbon source
Formate (C)
+0.4
N.D.
N.D.
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
+0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.4
N.D.
N.D.
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
+0.4
N.D.
N.D.
N.D.
N.D.
carbon source
butyrate (C)
+0.4
N.D.
N.D.
N.D.
N.D.
carbon source
L-Tryptophan (C)
+0.4
N.D.
N.D.
N.D.
N.D.
carbon source
Ethanol (C)
+0.4
N.D.
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
+0.5
N.D.
N.D.
N.D.
N.D.
carbon source
D-Fructose (C)
+0.5
N.D.
N.D.
N.D.
N.D.
carbon source
casaminos (C)
+0.5
N.D.
N.D.
N.D.
N.D.
phage
V2_100
+0.6
N.D.
N.D.
N.D.
N.D.
carbon source
Fumarate (C)
+0.6
N.D.
N.D.
N.D.
N.D.
carbon source
Glucuronamide (C)
+0.6
N.D.
N.D.
N.D.
N.D.
carbon source
L-Alanine (C)
+0.8
N.D.
N.D.
N.D.
N.D.
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