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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS11145 and ABID97_RS11150 are separated by 5 nucleotides
ABID97_RS11150 and ABID97_RS11155 are separated by 74 nucleotides
ABID97_RS11155 and ABID97_RS11160 are separated by 26 nucleotides
ABID97_RS11160 and ABID97_RS11165 are separated by 193 nucleotides
ABID97_RS11145: ABID97_RS11145 - phenylalanine--tRNA ligase subunit beta, at 2,305,170 to 2,307,611
_RS11145
ABID97_RS11150: ABID97_RS11150 - integration host factor subunit alpha, at 2,307,617 to 2,307,988
_RS11150
ABID97_RS11155: ABID97_RS11155 - MerR family transcriptional regulator, at 2,308,063 to 2,308,530
_RS11155
ABID97_RS11160: ABID97_RS11160 - tRNA-Pro, at 2,308,557 to 2,308,633
_RS11160
ABID97_RS11165: ABID97_RS11165 - integrase arm-type DNA-binding domain-containing protein, at 2,308,827 to 2,310,077
_RS11165
Group
Condition
ABID97
_RS11145
ABID97
_RS11150
ABID97
_RS11155
ABID97
_RS11160
ABID97
_RS11165
phage
V1_10
N.D.
N.D.
N.D.
N.D.
-0.4
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
L-Arabinose (C)
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
D-Galactose (C)
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
Formate (C)
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
L-Glutamine (C)
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
L-Leucine (C)
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
D-Galactose (C)
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
D-Xylose (C)
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
L-Proline (C)
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
N.D.
N.D.
+0.2
plant outgrowth control
Plant outgrowth control
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
D,L-Lactate (C)
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
L-Phenylalanine (C)
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
D-Glucose (C)
N.D.
N.D.
N.D.
N.D.
+0.3
phage
V1_1
N.D.
N.D.
N.D.
N.D.
+0.3
carbon source
D-Glucuronic Acid (C)
N.D.
N.D.
N.D.
N.D.
+0.3
carbon source
Fumarate (C)
N.D.
N.D.
N.D.
N.D.
+0.3
carbon source
D-Arabinose (C)
N.D.
N.D.
N.D.
N.D.
+0.3
carbon source
L-Tryptophan (C)
N.D.
N.D.
N.D.
N.D.
+0.3
carbon source
D-Mannose (C)
N.D.
N.D.
N.D.
N.D.
+0.3
carbon source
L-Alanine (C)
N.D.
N.D.
N.D.
N.D.
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
N.D.
N.D.
N.D.
+0.4
carbon source
L-Fucose (C)
N.D.
N.D.
N.D.
N.D.
+0.4
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
N.D.
N.D.
N.D.
+0.4
carbon source
propionate (C)
N.D.
N.D.
N.D.
N.D.
+0.4
carbon source
Gly-Glu (C)
N.D.
N.D.
N.D.
N.D.
+0.4
carbon source
L-Histidine (C)
N.D.
N.D.
N.D.
N.D.
+0.6
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