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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS10815 and ABID97_RS10820 are separated by 198 nucleotides
ABID97_RS10820 and ABID97_RS10825 are separated by 113 nucleotides
ABID97_RS10825 and ABID97_RS10830 are separated by 4 nucleotides
ABID97_RS10830 and ABID97_RS10835 are separated by 21 nucleotides
ABID97_RS10815: ABID97_RS10815 - phosphoenolpyruvate synthase, at 2,242,186 to 2,244,579
_RS10815
ABID97_RS10820: ABID97_RS10820 - hypothetical protein, at 2,244,778 to 2,245,299
_RS10820
ABID97_RS10825: ABID97_RS10825 - 30S ribosomal protein S6, at 2,245,413 to 2,245,787
_RS10825
ABID97_RS10830: ABID97_RS10830 - primosomal replication protein N, at 2,245,792 to 2,246,109
_RS10830
ABID97_RS10835: ABID97_RS10835 - 30S ribosomal protein S18, at 2,246,131 to 2,246,412
_RS10835
Group
Condition
ABID97
_RS10815
ABID97
_RS10820
ABID97
_RS10825
ABID97
_RS10830
ABID97
_RS10835
carbon source
L-Lactate (C)
-6.8
-0.0
N.D.
N.D.
N.D.
carbon source
D-Lactate (C)
-6.7
-0.0
N.D.
N.D.
N.D.
carbon source
pyruvate (C)
-6.4
-0.0
N.D.
N.D.
N.D.
carbon source
L-Lactate (C)
-6.7
+0.4
N.D.
N.D.
N.D.
carbon source
L-Tryptophan (C)
-5.9
+0.2
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
-5.8
+0.1
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
-5.9
+0.3
N.D.
N.D.
N.D.
carbon source
pyruvate (C)
-4.9
+0.1
N.D.
N.D.
N.D.
carbon source
L-Tryptophan (C)
-5.1
+0.3
N.D.
N.D.
N.D.
carbon source
L-Alanine (C)
-4.4
+0.4
N.D.
N.D.
N.D.
carbon source
L-Alanine (C)
-4.7
+0.7
N.D.
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
-1.5
-0.2
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
-1.4
-0.1
N.D.
N.D.
N.D.
carbon source
L-Fucose (C)
-1.1
-0.3
N.D.
N.D.
N.D.
carbon source
L-Fucose (C)
-1.3
-0.0
N.D.
N.D.
N.D.
carbon source
Tween 20 (C)
-1.1
-0.2
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
-1.0
-0.3
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
-1.4
+0.1
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
-1.3
+0.2
N.D.
N.D.
N.D.
carbon source
Tween 20 (C)
-1.3
+0.4
N.D.
N.D.
N.D.
carbon source
D-Galactose (C)
-1.2
+0.3
N.D.
N.D.
N.D.
carbon source
D-Serine (C)
-1.1
+0.4
N.D.
N.D.
N.D.
carbon source
D-Fructose (C)
-1.0
+0.4
N.D.
N.D.
N.D.
carbon source
butyrate (C)
+0.5
-1.0
N.D.
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-0.8
+0.6
N.D.
N.D.
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.7
+0.6
N.D.
N.D.
N.D.
phage
V2_100
+1.5
-0.3
N.D.
N.D.
N.D.
carbon source
D-Glucuronic Acid (C)
+1.1
+0.4
N.D.
N.D.
N.D.
carbon source
Glucuronamide (C)
+1.7
-0.0
N.D.
N.D.
N.D.
carbon source
Glucuronamide (C)
+1.9
+0.2
N.D.
N.D.
N.D.
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