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Gene
Fitness
Nearby
Cofit
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS10565 and ABID97_RS10570 are separated by 181 nucleotides
ABID97_RS10570 and ABID97_RS10575 overlap by 4 nucleotides
ABID97_RS10575 and ABID97_RS10580 are separated by 78 nucleotides
ABID97_RS10580 and ABID97_RS10585 are separated by 71 nucleotides
ABID97_RS10565: ABID97_RS10565 - phasin family protein, at 2,198,483 to 2,199,034
_RS10565
ABID97_RS10570: ABID97_RS10570 - histone deacetylase, at 2,199,216 to 2,200,142
_RS10570
ABID97_RS10575: ABID97_RS10575 - thioesterase family protein, at 2,200,139 to 2,200,583
_RS10575
ABID97_RS10580: ABID97_RS10580 - hypothetical protein, at 2,200,662 to 2,201,069
_RS10580
ABID97_RS10585: ABID97_RS10585 - CsbD family protein, at 2,201,141 to 2,201,374
_RS10585
Group
Condition
ABID97
_RS10565
ABID97
_RS10570
ABID97
_RS10575
ABID97
_RS10580
ABID97
_RS10585
carbon source
4-Hydroxybenzoic Acid (C)
-2.0
-0.1
-0.2
+0.3
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-2.1
-0.2
-0.2
+0.4
N.D.
carbon source
acetate (C)
-1.6
+0.1
-0.2
+0.0
N.D.
carbon source
butyrate (C)
-0.8
-0.1
-0.5
-0.3
N.D.
carbon source
Gly-Glu (C)
-1.2
+0.2
-0.3
-0.2
N.D.
carbon source
butyrate (C)
-0.7
-0.3
-0.5
+0.1
N.D.
phage
V1_10
-0.9
-0.2
+0.1
-0.2
N.D.
carbon source
Glucuronamide (C)
-0.8
-0.2
-0.2
+0.1
N.D.
phage
V2_100
-1.4
+0.0
+0.0
+0.2
N.D.
carbon source
L-Lactate (C)
-0.9
+0.1
-0.3
+0.1
N.D.
carbon source
D-Serine (C)
-1.2
+0.1
-0.2
+0.3
N.D.
carbon source
Gly-Glu (C)
-1.2
+0.3
-0.1
-0.0
N.D.
carbon source
D-Mannose (C)
-1.0
+0.1
-0.1
+0.1
N.D.
carbon source
L-Asparagine (C)
-0.6
+0.2
-0.3
-0.2
N.D.
carbon source
L-Threonine (C)
-0.6
+0.2
-0.4
+0.0
N.D.
carbon source
acetate (C)
-1.0
-0.0
-0.0
+0.2
N.D.
carbon source
D,L-Malic Acid (C)
-0.5
-0.2
-0.2
+0.2
N.D.
carbon source
D-Glucuronic Acid (C)
-0.7
-0.0
-0.3
+0.3
N.D.
carbon source
L-Lactate (C)
-0.5
+0.1
-0.5
+0.2
N.D.
carbon source
L-tyrosine (C)
-0.5
-0.4
-0.2
+0.5
N.D.
carbon source
Glycolic Acid (C)
-0.9
+0.3
-0.1
+0.1
N.D.
carbon source
D-Xylose (C)
-0.8
+0.4
-0.2
+0.1
N.D.
carbon source
L-Glutamine (C)
-0.8
+0.0
-0.1
+0.3
N.D.
phage
V2_10
-1.1
+0.5
-0.0
+0.1
N.D.
carbon source
D-Ribose (C)
-0.7
+0.1
-0.2
+0.3
N.D.
carbon source
Formate (C)
-0.7
+0.0
+0.2
+0.3
N.D.
carbon source
Glycolic Acid (C)
-0.6
+0.2
-0.1
+0.4
N.D.
carbon source
Glucuronamide (C)
-0.6
+0.2
+0.1
+0.5
N.D.
carbon source
Formate (C)
-0.5
+0.4
+0.0
+0.5
N.D.
carbon source
L-Leucine (C)
+0.6
+0.2
-0.2
-0.0
N.D.
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