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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS10550 and ABID97_RS10555 overlap by 4 nucleotides
ABID97_RS10555 and ABID97_RS10560 are separated by 235 nucleotides
ABID97_RS10560 and ABID97_RS10565 are separated by 128 nucleotides
ABID97_RS10565 and ABID97_RS10570 are separated by 181 nucleotides
ABID97_RS10550: ABID97_RS10550 - hypothetical protein, at 2,195,475 to 2,195,717
_RS10550
ABID97_RS10555: ABID97_RS10555 - transglutaminase family protein, at 2,195,714 to 2,197,360
_RS10555
ABID97_RS10560: ABID97_RS10560 - 3-hydroxyacyl-CoA dehydrogenase, at 2,197,596 to 2,198,354
_RS10560
ABID97_RS10565: ABID97_RS10565 - phasin family protein, at 2,198,483 to 2,199,034
_RS10565
ABID97_RS10570: ABID97_RS10570 - histone deacetylase, at 2,199,216 to 2,200,142
_RS10570
Group
Condition
ABID97
_RS10550
ABID97
_RS10555
ABID97
_RS10560
ABID97
_RS10565
ABID97
_RS10570
carbon source
butyrate (C)
-0.3
-0.1
-1.2
-0.7
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-0.1
-0.0
-2.1
-0.2
carbon source
L-Threonine (C)
-0.2
-0.1
-1.7
-0.3
-0.1
carbon source
L-tyrosine (C)
-0.1
-0.2
-0.8
-0.5
-0.4
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
-0.1
+0.3
-2.0
-0.1
carbon source
L-Threonine (C)
-0.2
-0.1
-1.1
-0.6
+0.2
carbon source
casaminos (C)
-0.1
-0.0
-1.4
-0.3
+0.0
carbon source
acetate (C)
+0.1
+0.0
-0.2
-1.6
+0.1
carbon source
acetate (C)
-0.0
-0.0
-0.5
-1.0
-0.0
carbon source
butyrate (C)
-0.3
-0.0
-0.4
-0.8
-0.1
carbon source
D,L-Lactate (C)
-0.1
-0.0
-0.5
-0.8
-0.0
carbon source
L-Lactate (C)
-0.1
-0.0
-0.4
-0.9
+0.1
carbon source
Gly-Glu (C)
-0.0
-0.0
-0.2
-1.2
+0.2
carbon source
L-Asparagine (C)
-0.2
-0.2
-0.5
-0.6
+0.2
carbon source
D-Ribose (C)
+0.0
-0.1
-0.7
-0.7
+0.1
carbon source
D-Mannose (C)
-0.3
+0.0
-0.1
-1.0
+0.1
carbon source
Gly-Glu (C)
-0.1
+0.1
-0.3
-1.2
+0.3
carbon source
D-Glucose (C)
-0.1
-0.0
-0.6
-0.6
+0.1
phage
V2_100
+0.4
-0.0
-0.1
-1.4
+0.0
carbon source
D-Galactose (C)
+0.1
-0.0
-0.6
-0.7
+0.2
carbon source
L-Alanine (C)
-0.4
-0.1
-0.7
+0.0
+0.2
carbon source
D-Serine (C)
+0.1
-0.0
-0.1
-1.2
+0.1
carbon source
Glycolic Acid (C)
-0.2
-0.1
-0.3
-0.6
+0.2
carbon source
Tween 20 (C)
-0.2
-0.0
-0.6
-0.3
+0.3
carbon source
D-Xylose (C)
+0.0
-0.1
-0.2
-0.8
+0.4
carbon source
Glycolic Acid (C)
+0.1
-0.0
-0.2
-0.9
+0.3
carbon source
Glucuronamide (C)
+0.1
+0.1
-0.5
-0.6
+0.2
phage
V1_10
+0.1
-0.0
+0.5
-0.9
-0.2
phage
V2_10
+0.2
+0.0
+0.1
-1.1
+0.5
carbon source
L-Leucine (C)
+0.0
+0.0
-0.6
+0.6
+0.2
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