Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS10520 and ABID97_RS10525 are separated by 22 nucleotidesABID97_RS10525 and ABID97_RS10530 are separated by 4 nucleotidesABID97_RS10530 and ABID97_RS10535 are separated by 91 nucleotidesABID97_RS10535 and ABID97_RS10540 are separated by 337 nucleotides ABID97_RS10520: ABID97_RS10520 - quaternary ammonium compound efflux SMR transporter SugE, at 2,186,883 to 2,187,203 _RS10520 ABID97_RS10525: ABID97_RS10525 - HPP family protein, at 2,187,226 to 2,188,347 _RS10525 ABID97_RS10530: ABID97_RS10530 - multidrug effflux MFS transporter, at 2,188,352 to 2,189,587 _RS10530 ABID97_RS10535: ABID97_RS10535 - RNA polymerase sigma factor RpoD, at 2,189,679 to 2,192,033 _RS10535 ABID97_RS10540: ABID97_RS10540 - DNA primase, at 2,192,371 to 2,194,347 _RS10540
Group Condition ABID97_RS10520 ABID97_RS10525 ABID97_RS10530 ABID97_RS10535 ABID97_RS10540
phage V2_10 -0.5 -0.1 -0.3 N.D. N.D.
carbon source a-Ketoglutaric (C) -0.3 -0.1 -0.4 N.D. N.D.
carbon source Formate (C) -0.7 -0.1 +0.2 N.D. N.D.
carbon source D,L-Malic Acid (C) -0.4 +0.1 -0.2 N.D. N.D.
carbon source butyrate (C) -0.6 -0.0 +0.2 N.D. N.D.
carbon source butyrate (C) -0.6 +0.3 -0.0 N.D. N.D.
carbon source Glycerol (C) -0.5 +0.3 +0.1 N.D. N.D.
carbon source acetate (C) -0.5 -0.1 +0.4 N.D. N.D.
carbon source Ethanol (C) -0.6 +0.2 +0.2 N.D. N.D.
carbon source L-Fucose (C) +0.2 +0.2 -0.4 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.6 +0.1 +0.5 N.D. N.D.
carbon source L-Fucose (C) -0.3 +0.3 -0.0 N.D. N.D.
carbon source L-Phenylalanine (C) -0.4 +0.4 +0.0 N.D. N.D.
r2a outgrowth control R2A outgrowth control -0.4 +0.2 +0.2 N.D. N.D.
carbon source succinate (C) +0.2 +0.3 -0.3 N.D. N.D.
carbon source L-Histidine (C) -0.3 -0.1 +0.5 N.D. N.D.
carbon source L-Alanine (C) -0.2 +0.3 +0.2 N.D. N.D.
carbon source D,L-Malic Acid (C) +0.4 -0.2 +0.2 N.D. N.D.
carbon source D-Xylose (C) -0.2 +0.4 +0.3 N.D. N.D.
carbon source L-Leucine (C) -0.1 +0.3 +0.3 N.D. N.D.
carbon source L-Lactate (C) -0.2 +0.4 +0.3 N.D. N.D.
carbon source propionate (C) -0.2 +0.4 +0.3 N.D. N.D.
carbon source D-Mannose (C) -0.1 +0.4 +0.2 N.D. N.D.
carbon source L-Threonine (C) -0.1 +0.3 +0.5 N.D. N.D.
carbon source D-Glucose (C) +0.4 +0.1 +0.2 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.3 +0.1 +0.3 N.D. N.D.
carbon source D-Fructose (C) +0.1 +0.3 +0.4 N.D. N.D.
carbon source D-Fructose (C) +0.4 +0.1 +0.3 N.D. N.D.
carbon source D-Lactate (C) +0.3 +0.3 +0.3 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.4 +0.9 N.D. N.D.
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