Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS10510 and ABID97_RS10515 are separated by 31 nucleotidesABID97_RS10515 and ABID97_RS10520 are separated by 25 nucleotidesABID97_RS10520 and ABID97_RS10525 are separated by 22 nucleotidesABID97_RS10525 and ABID97_RS10530 are separated by 4 nucleotides ABID97_RS10510: ABID97_RS10510 - CoA transferase, at 2,184,634 to 2,185,839 _RS10510 ABID97_RS10515: ABID97_RS10515 - tripartite tricarboxylate transporter substrate binding protein, at 2,185,871 to 2,186,857 _RS10515 ABID97_RS10520: ABID97_RS10520 - quaternary ammonium compound efflux SMR transporter SugE, at 2,186,883 to 2,187,203 _RS10520 ABID97_RS10525: ABID97_RS10525 - HPP family protein, at 2,187,226 to 2,188,347 _RS10525 ABID97_RS10530: ABID97_RS10530 - multidrug effflux MFS transporter, at 2,188,352 to 2,189,587 _RS10530
Group Condition ABID97_RS10510 ABID97_RS10515 ABID97_RS10520 ABID97_RS10525 ABID97_RS10530
carbon source butyrate (C) -0.3 -0.2 -0.6 -0.0 +0.2
phage V2_10 -0.0 +0.1 -0.5 -0.1 -0.3
carbon source Formate (C) -0.2 +0.0 -0.7 -0.1 +0.2
carbon source L-Arabinose (C) +0.3 -0.5 -0.2 -0.1 -0.3
carbon source L-Fucose (C) -0.2 -0.4 +0.2 +0.2 -0.4
carbon source butyrate (C) -0.1 -0.1 -0.6 +0.3 -0.0
carbon source L-Alanine (C) -0.3 -0.2 -0.1 -0.0 +0.3
carbon source D,L-Malic Acid (C) +0.4 -0.2 -0.4 +0.1 -0.2
carbon source propionate (C) -0.2 -0.3 -0.1 +0.2 +0.3
carbon source 4-Hydroxybenzoic Acid (C) -0.1 +0.0 -0.6 +0.1 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.3 -0.1 +0.1 +0.4
carbon source Ethanol (C) -0.0 +0.1 -0.6 +0.2 +0.2
carbon source acetate (C) +0.1 +0.1 -0.5 -0.1 +0.4
carbon source L-Alanine (C) +0.3 -0.5 -0.2 +0.3 +0.2
carbon source Glycerol (C) +0.2 +0.1 -0.5 +0.3 +0.1
carbon source L-Phenylalanine (C) +0.3 -0.0 -0.4 +0.4 +0.0
carbon source L-Histidine (C) +0.4 -0.2 -0.3 -0.1 +0.5
carbon source Glycolic Acid (C) +0.1 -0.3 +0.4 +0.2 +0.0
carbon source L-Lactate (C) +0.2 -0.1 -0.2 +0.4 +0.3
carbon source D-Xylose (C) +0.1 +0.1 -0.2 +0.4 +0.3
carbon source D-Arabinose (C) +0.2 -0.3 +0.1 +0.1 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.2 +0.3 +0.2 +0.2
carbon source D,L-Malic Acid (C) +0.5 -0.2 +0.4 -0.2 +0.2
carbon source L-Threonine (C) +0.1 -0.1 -0.1 +0.3 +0.5
carbon source propionate (C) +0.2 +0.1 -0.2 +0.4 +0.3
carbon source D-Fructose (C) +0.3 -0.2 +0.4 +0.1 +0.3
carbon source D-Fructose (C) +0.2 +0.0 +0.1 +0.3 +0.4
carbon source L-tyrosine (C) +0.3 +0.2 -0.1 +0.4 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.6 -0.2 +0.4 +0.9
carbon source D-Lactate (C) +0.2 -0.0 +0.3 +0.3 +0.3
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