Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS10455 and ABID97_RS10460 are separated by 35 nucleotidesABID97_RS10460 and ABID97_RS10465 are separated by 149 nucleotidesABID97_RS10465 and ABID97_RS10470 are separated by 160 nucleotidesABID97_RS10470 and ABID97_RS10475 are separated by 0 nucleotides ABID97_RS10455: ABID97_RS10455 - GntR family transcriptional regulator, at 2,173,450 to 2,174,226 _RS10455 ABID97_RS10460: ABID97_RS10460 - PDR/VanB family oxidoreductase, at 2,174,262 to 2,175,248 _RS10460 ABID97_RS10465: ABID97_RS10465 - ABC transporter substrate-binding protein, at 2,175,398 to 2,176,573 _RS10465 ABID97_RS10470: ABID97_RS10470 - branched-chain amino acid ABC transporter permease, at 2,176,734 to 2,177,606 _RS10470 ABID97_RS10475: ABID97_RS10475 - branched-chain amino acid ABC transporter permease, at 2,177,607 to 2,178,590 _RS10475
Group Condition ABID97_RS10455 ABID97_RS10460 ABID97_RS10465 ABID97_RS10470 ABID97_RS10475
carbon source D,L-Malic Acid (C) N.D. +0.7 -0.6 -1.1 N.D.
carbon source L-Arabinose (C) N.D. -0.3 -0.1 -0.3 N.D.
phage V2_1 N.D. -0.4 -0.1 -0.2 N.D.
phage V2_100 N.D. -0.5 +0.4 -0.6 N.D.
carbon source D-Glucuronic Acid (C) N.D. +0.8 -0.8 -0.6 N.D.
phage V2_10 N.D. -0.3 +0.2 -0.3 N.D.
carbon source butyrate (C) N.D. +0.2 -0.3 -0.3 N.D.
carbon source L-Histidine (C) N.D. -0.6 +0.0 +0.2 N.D.
carbon source Glycolic Acid (C) N.D. +0.2 -0.1 -0.5 N.D.
carbon source Gly-Glu (C) N.D. +0.3 -0.3 -0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.4 +0.5 -0.3 N.D.
carbon source Gly-Glu (C) N.D. +0.6 -0.3 -0.4 N.D.
carbon source Glycolic Acid (C) N.D. +0.2 +0.2 -0.4 N.D.
carbon source Ethanol (C) N.D. +0.3 +0.1 -0.4 N.D.
carbon source D-Gluconic Acid (C) N.D. +0.6 -0.4 -0.2 N.D.
carbon source L-Histidine (C) N.D. -0.4 +0.4 +0.0 N.D.
carbon source L-Glutamic (C) N.D. +0.1 +0.3 -0.3 N.D.
carbon source D-Arabinose (C) N.D. +0.3 +0.2 -0.3 N.D.
carbon source Glucuronamide (C) N.D. -0.0 +0.5 -0.2 N.D.
carbon source acetate (C) N.D. +0.1 +0.4 -0.3 N.D.
carbon source D,L-Lactate (C) N.D. +0.5 -0.0 -0.2 N.D.
carbon source D-Gluconic Acid (C) N.D. +0.6 +0.2 -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.2 +0.3 +0.3 N.D.
carbon source L-Glutamine (C) N.D. +0.3 +0.4 -0.3 N.D.
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.2 +0.5 +0.3 N.D.
carbon source L-tyrosine (C) N.D. +0.2 +0.6 -0.2 N.D.
r2a outgrowth control R2A outgrowth control N.D. +0.1 +0.5 +0.1 N.D.
carbon source L-Alanine (C) N.D. +0.3 +0.3 +0.1 N.D.
carbon source L-Proline (C) N.D. +0.1 +0.4 +0.3 N.D.
carbon source D,L-Malic Acid (C) N.D. +0.7 +0.2 +0.1 N.D.
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ABID97_RS10455
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ABID97_RS10460
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