Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS10370 and ABID97_RS10375 are separated by 25 nucleotidesABID97_RS10375 and ABID97_RS10380 are separated by 88 nucleotidesABID97_RS10380 and ABID97_RS10385 are separated by 39 nucleotidesABID97_RS10385 and ABID97_RS10390 are separated by 100 nucleotides ABID97_RS10370: ABID97_RS10370 - nuclear transport factor 2 family protein, at 2,153,207 to 2,153,656 _RS10370 ABID97_RS10375: ABID97_RS10375 - glucarate dehydratase, at 2,153,682 to 2,155,040 _RS10375 ABID97_RS10380: ABID97_RS10380 - aldehyde dehydrogenase family protein, at 2,155,129 to 2,156,565 _RS10380 ABID97_RS10385: ABID97_RS10385 - MFS transporter, at 2,156,605 to 2,157,840 _RS10385 ABID97_RS10390: ABID97_RS10390 - LysR family transcriptional regulator, at 2,157,941 to 2,158,753 _RS10390
Group Condition ABID97_RS10370 ABID97_RS10375 ABID97_RS10380 ABID97_RS10385 ABID97_RS10390
carbon source D-Glucuronic Acid (C) -3.2 -3.8 N.D. +0.7 +0.4
carbon source butyrate (C) -1.3 +0.3 N.D. -1.9 +0.0
carbon source Tween 20 (C) -0.8 +0.0 N.D. -1.6 -0.3
carbon source L-tyrosine (C) -2.1 -0.4 N.D. +0.3 -0.5
carbon source L-Malic (C) -0.8 -0.0 N.D. -1.2 -0.0
carbon source D-Fructose (C) -0.2 -0.2 N.D. -1.8 +0.1
carbon source D-Sorbitol (C) -0.2 +0.0 N.D. -2.0 +0.1
carbon source L-Threonine (C) -0.5 -0.7 N.D. -1.2 +0.3
carbon source L-Asparagine (C) -0.2 -0.3 N.D. -1.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.3 N.D. -1.6 +0.2
carbon source Adenine (C) +0.1 -0.3 N.D. -1.5 -0.1
carbon source D-Lactate (C) -1.2 -0.1 N.D. -0.1 -0.3
carbon source 2-Deoxy-D-Ribose (C) -1.3 -0.3 N.D. -0.0 +0.1
carbon source propionate (C) -0.0 +0.4 N.D. -1.7 -0.1
carbon source D-Serine (C) -0.9 -0.2 N.D. -0.4 +0.1
carbon source L-Glutamine (C) -0.8 +0.1 N.D. -0.5 -0.3
phage V1_10 -0.7 -0.6 N.D. -0.1 +0.2
carbon source D-Gluconic Acid (C) -0.4 +0.3 N.D. -0.9 +0.1
carbon source Gly-Glu (C) +0.0 +0.3 N.D. -1.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.5 N.D. -1.4 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.1 +0.5 N.D. -1.0 -0.1
carbon source L-Phenylalanine (C) +0.3 +0.5 N.D. -0.8 -0.2
control NP -0.3 -0.6 N.D. +0.6 +0.2
plant outgrowth control Plant outgrowth control +0.0 +0.8 N.D. -0.8 -0.1
carbon source D,L-Malic Acid (C) +0.2 -0.1 N.D. +1.0 -0.8
phage V2_10 -0.4 -0.7 N.D. +1.0 +0.4
phage V1_1 +0.5 -0.4 N.D. +0.6 +0.2
phage V2_100 +0.9 +0.2 N.D. -0.3 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +0.5 N.D. -0.1 -0.1
r2a outgrowth control R2A outgrowth control +0.6 +0.7 N.D. +0.5 -0.0
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