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Gene
Fitness
Nearby
Cofit
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS09970 and ABID97_RS09975 are separated by 13 nucleotides
ABID97_RS09975 and ABID97_RS09980 are separated by 38 nucleotides
ABID97_RS09980 and ABID97_RS09985 are separated by 9 nucleotides
ABID97_RS09985 and ABID97_RS09990 are separated by 126 nucleotides
ABID97_RS09970: ABID97_RS09970 - altronate dehydratase family protein, at 2,072,112 to 2,073,653
_RS09970
ABID97_RS09975: ABID97_RS09975 - L-rhamnonate dehydratase, at 2,073,667 to 2,074,839
_RS09975
ABID97_RS09980: ABID97_RS09980 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 2,074,878 to 2,075,928
_RS09980
ABID97_RS09985: ABID97_RS09985 - tripartite tricarboxylate transporter substrate binding protein, at 2,075,938 to 2,076,888
_RS09985
ABID97_RS09990: ABID97_RS09990 - LysR family transcriptional regulator, at 2,077,015 to 2,077,965
_RS09990
Group
Condition
ABID97
_RS09970
ABID97
_RS09975
ABID97
_RS09980
ABID97
_RS09985
ABID97
_RS09990
carbon source
D-Galactose (C)
+0.1
-0.3
-0.0
+0.2
-2.0
carbon source
D-Glucose (C)
+0.0
-0.0
+0.2
+0.3
-1.4
r2a outgrowth control
R2A outgrowth control
-0.2
+0.1
-0.2
+0.0
-0.6
carbon source
L-Fucose (C)
-0.2
-0.3
-0.0
+0.2
-0.4
carbon source
L-Malic (C)
-0.1
-0.2
+0.4
+0.1
-0.6
carbon source
D-Glucose (C)
+0.1
-0.1
+0.5
+0.1
-0.6
carbon source
L-Phenylalanine (C)
-0.2
-0.0
+0.3
+0.2
-0.3
carbon source
Tween 20 (C)
+0.2
-0.2
+0.2
+0.3
-0.5
carbon source
L-Alanine (C)
+0.1
+0.2
+0.5
-0.1
-0.7
carbon source
L-tyrosine (C)
-0.2
-0.0
+0.3
-0.3
+0.6
carbon source
Glucuronamide (C)
+0.2
+0.2
+0.3
+0.3
-0.7
carbon source
propionate (C)
-0.1
+0.1
+0.7
+0.2
-0.6
phage
V2_100
-0.4
+0.2
-0.2
+0.2
+0.6
carbon source
D,L-Malic Acid (C)
+0.5
+0.1
-0.3
-0.1
+0.4
carbon source
L-Glutamine (C)
+0.2
-0.0
+0.4
+0.3
-0.4
carbon source
a-Ketoglutaric (C)
+0.2
-0.1
-0.1
+0.2
+0.5
carbon source
D-Glucuronic Acid (C)
-0.2
-0.2
+0.2
+0.4
+0.5
carbon source
L-Threonine (C)
-0.1
-0.1
+0.4
+0.2
+0.3
carbon source
pyruvate (C)
-0.0
-0.1
+0.1
+0.1
+0.7
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
+0.2
+0.4
+0.5
-0.3
carbon source
Gly-Glu (C)
+0.2
-0.0
+0.3
+0.3
+0.4
carbon source
L-Tryptophan (C)
+0.2
+0.1
+0.1
+0.2
+0.6
carbon source
Glycolic Acid (C)
+0.2
+0.0
+0.4
+0.2
+0.4
carbon source
Tween 20 (C)
-0.3
+0.0
+0.4
+0.4
+0.7
carbon source
L-Histidine (C)
+0.3
+0.0
+0.5
+0.1
+0.8
carbon source
butyrate (C)
+0.2
+0.0
+0.2
+0.3
+1.0
carbon source
L-Arabinose (C)
+0.7
+0.4
+1.1
+0.8
-0.3
carbon source
D-Arabinose (C)
+0.0
+0.3
+1.6
+1.8
-0.5
carbon source
L-Arabinose (C)
+0.7
+0.3
+0.9
+1.0
+0.3
carbon source
D-Arabinose (C)
+0.2
+0.3
+1.6
+1.9
-0.3
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