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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS09950 and ABID97_RS09955 are separated by 14 nucleotides
ABID97_RS09955 and ABID97_RS09960 are separated by 116 nucleotides
ABID97_RS09960 and ABID97_RS09965 are separated by 14 nucleotides
ABID97_RS09965 and ABID97_RS09970 are separated by 20 nucleotides
ABID97_RS09950: ABID97_RS09950 - hypothetical protein, at 2,068,294 to 2,068,794
_RS09950
ABID97_RS09955: ABID97_RS09955 - exodeoxyribonuclease III, at 2,068,809 to 2,069,594
_RS09955
ABID97_RS09960: ABID97_RS09960 - aldehyde dehydrogenase family protein, at 2,069,711 to 2,071,147
_RS09960
ABID97_RS09965: ABID97_RS09965 - dihydrodipicolinate synthase family protein, at 2,071,162 to 2,072,091
_RS09965
ABID97_RS09970: ABID97_RS09970 - altronate dehydratase family protein, at 2,072,112 to 2,073,653
_RS09970
Group
Condition
ABID97
_RS09950
ABID97
_RS09955
ABID97
_RS09960
ABID97
_RS09965
ABID97
_RS09970
carbon source
L-Histidine (C)
-0.1
-2.3
N.D.
-0.5
+0.3
carbon source
Tween 20 (C)
-0.4
-0.6
N.D.
-0.5
-0.3
carbon source
D,L-Malic Acid (C)
-0.1
-1.0
N.D.
-0.6
+0.0
carbon source
L-Histidine (C)
-0.0
-1.8
N.D.
+0.0
+0.1
carbon source
L-Asparagine (C)
-0.2
-0.7
N.D.
-0.7
+0.1
carbon source
D-Ribose (C)
-0.3
-0.9
N.D.
-0.1
-0.1
carbon source
Ethanol (C)
+0.1
-0.5
N.D.
-0.6
-0.3
carbon source
2-Deoxy-D-Ribose (C)
-0.3
-0.8
N.D.
-0.2
-0.0
carbon source
D-Sorbitol (C)
-0.3
-0.6
N.D.
-0.3
-0.1
carbon source
Glycerol (C)
-0.2
-0.6
N.D.
-0.4
-0.1
carbon source
L-Threonine (C)
-0.0
-1.1
N.D.
+0.1
-0.1
carbon source
D,L-Malic Acid (C)
+0.0
-0.3
N.D.
-1.4
+0.5
carbon source
L-Glutamine (C)
-0.1
-1.0
N.D.
-0.1
+0.1
carbon source
D-Glucose (C)
-0.2
-0.8
N.D.
-0.1
+0.1
carbon source
Glucuronamide (C)
-0.1
-0.7
N.D.
-0.4
+0.2
carbon source
a-Ketoglutaric (C)
-0.3
-0.4
N.D.
-0.4
+0.2
carbon source
Glycerol (C)
-0.2
-0.5
N.D.
-0.3
+0.2
carbon source
acetate (C)
-0.3
-0.5
N.D.
-0.2
+0.2
carbon source
Glycolic Acid (C)
-0.3
-0.7
N.D.
-0.1
+0.2
r2a outgrowth control
R2A outgrowth control
-0.4
-0.3
N.D.
-0.4
+0.2
carbon source
butyrate (C)
-0.3
-0.8
N.D.
+0.2
+0.1
carbon source
Tween 20 (C)
-0.3
-0.4
N.D.
-0.3
+0.2
carbon source
L-Glutamine (C)
+0.1
-0.6
N.D.
-0.4
+0.2
carbon source
L-tyrosine (C)
-0.2
-0.6
N.D.
+0.3
-0.2
carbon source
casaminos (C)
-0.2
-0.7
N.D.
+0.2
+0.0
carbon source
L-Proline (C)
+0.2
-0.7
N.D.
+0.1
-0.1
carbon source
D-Serine (C)
-0.2
-0.5
N.D.
+0.4
+0.1
carbon source
L-Arabinose (C)
-0.3
-0.6
N.D.
+0.0
+0.7
phage
V2_100
+0.6
+0.0
N.D.
-0.3
-0.4
carbon source
L-Arabinose (C)
-0.2
-0.4
N.D.
+0.6
+0.7
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