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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS09905 and ABID97_RS09910 overlap by 17 nucleotides
ABID97_RS09910 and ABID97_RS09915 are separated by 10 nucleotides
ABID97_RS09915 and ABID97_RS09920 are separated by 38 nucleotides
ABID97_RS09920 and ABID97_RS09925 overlap by 4 nucleotides
ABID97_RS09905: ABID97_RS09905 - YncE family protein, at 2,058,914 to 2,059,921
_RS09905
ABID97_RS09910: ABID97_RS09910 - polysaccharide deacetylase family protein, at 2,059,905 to 2,060,732
_RS09910
ABID97_RS09915: ABID97_RS09915 - sterol desaturase family protein, at 2,060,743 to 2,061,717
_RS09915
ABID97_RS09920: ABID97_RS09920 - EI24 domain-containing protein, at 2,061,756 to 2,062,631
_RS09920
ABID97_RS09925: ABID97_RS09925 - molybdopterin-binding protein, at 2,062,628 to 2,063,434
_RS09925
Group
Condition
ABID97
_RS09905
ABID97
_RS09910
ABID97
_RS09915
ABID97
_RS09920
ABID97
_RS09925
carbon source
D,L-Malic Acid (C)
-4.5
-2.8
-4.5
+0.5
-0.0
carbon source
D-Xylose (C)
-0.2
-0.1
-0.4
-0.7
+0.0
carbon source
Tween 20 (C)
+0.1
+0.2
-0.1
-1.5
+0.1
carbon source
D,L-Malic Acid (C)
-0.0
-0.1
+0.0
-0.4
-0.4
carbon source
L-tyrosine (C)
+0.0
-0.1
-0.2
-0.8
+0.2
carbon source
L-Histidine (C)
-0.2
+0.1
+0.1
-0.5
-0.1
carbon source
D-Glucose (C)
-0.2
-0.5
+0.0
+0.3
-0.0
carbon source
D-Galactose (C)
-0.1
-0.2
+0.2
-0.3
-0.1
phage
V1_1
+0.1
+0.2
-0.4
-0.2
-0.1
carbon source
D-Glucuronic Acid (C)
+0.1
-0.4
+0.2
+0.3
-0.4
carbon source
Fumarate (C)
-0.1
-0.3
+0.2
+0.2
-0.2
carbon source
Ethanol (C)
-0.2
+0.1
+0.4
-0.4
-0.2
phage
V2_100
+0.3
-0.0
+0.1
+0.1
-0.5
carbon source
D-Mannose (C)
-0.1
+0.1
-0.4
+0.4
+0.0
carbon source
Tween 20 (C)
+0.2
+0.3
+0.2
-0.5
-0.1
carbon source
L-Alanine (C)
+0.1
-0.3
+0.6
-0.1
-0.1
r2a outgrowth control
R2A outgrowth control
+0.2
-0.1
-0.2
+0.3
-0.2
carbon source
butyrate (C)
-0.0
-0.1
-0.0
+0.6
-0.3
r2a outgrowth control
R2A outgrowth control
+0.1
+0.2
+0.2
-0.3
-0.1
carbon source
D-Xylose (C)
-0.1
-0.3
-0.2
+0.7
+0.1
plant outgrowth control
Plant outgrowth control
+0.2
+0.2
+0.3
-0.1
-0.2
carbon source
Glucuronamide (C)
+0.2
+0.3
+0.1
+0.1
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
+0.4
+0.4
-0.3
-0.1
carbon source
D-Galactose (C)
+0.0
-0.2
+0.3
+0.5
+0.0
carbon source
L-Proline (C)
+0.2
-0.1
+0.1
+0.6
+0.1
carbon source
butyrate (C)
+0.1
+0.0
+0.5
+0.7
-0.5
carbon source
L-Phenylalanine (C)
+0.2
-0.2
+0.3
+0.4
+0.1
carbon source
L-Alanine (C)
+0.3
+0.2
+0.4
+0.1
-0.1
carbon source
Gly-Glu (C)
+0.4
+0.1
+0.5
+0.1
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
+0.2
+0.6
+0.3
-0.1
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