Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS09370 and ABID97_RS09375 overlap by 4 nucleotidesABID97_RS09375 and ABID97_RS09380 overlap by 4 nucleotidesABID97_RS09380 and ABID97_RS09385 are separated by 116 nucleotidesABID97_RS09385 and ABID97_RS09390 are separated by 4 nucleotides ABID97_RS09370: ABID97_RS09370 - ABC transporter permease, at 1,970,415 to 1,971,173 _RS09370 ABID97_RS09375: ABID97_RS09375 - ATP-binding cassette domain-containing protein, at 1,971,170 to 1,971,889 _RS09375 ABID97_RS09380: ABID97_RS09380 - substrate-binding domain-containing protein, at 1,971,886 to 1,972,743 _RS09380 ABID97_RS09385: ABID97_RS09385 - nuclear transport factor 2 family protein, at 1,972,860 to 1,973,237 _RS09385 ABID97_RS09390: ABID97_RS09390 - helix-turn-helix domain-containing protein, at 1,973,242 to 1,974,381 _RS09390
Group Condition ABID97_RS09370 ABID97_RS09375 ABID97_RS09380 ABID97_RS09385 ABID97_RS09390
carbon source L-tyrosine (C) N.D. +0.1 -0.5 -0.8 -0.2
carbon source L-Alanine (C) N.D. +0.3 +0.1 -0.3 -0.8
carbon source L-Arabinose (C) N.D. +0.1 -0.1 -0.7 +0.3
r2a outgrowth control R2A outgrowth control N.D. +0.1 -0.5 -0.5 +0.6
carbon source casaminos (C) N.D. +0.2 +0.3 +0.1 -0.8
carbon source L-Asparagine (C) N.D. +0.6 -0.1 -0.1 -0.5
carbon source propionate (C) N.D. -0.2 -0.3 -0.1 +0.7
carbon source Glucuronamide (C) N.D. +0.3 -0.3 +0.4 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +1.1 -0.5 -0.4 +0.2
plant outgrowth control Plant outgrowth control N.D. +0.5 -0.1 -0.4 +0.3
carbon source Glucuronamide (C) N.D. +0.8 -0.2 -0.4 +0.1
carbon source D-Xylose (C) N.D. +0.5 -0.2 -0.2 +0.4
carbon source L-Asparagine (C) N.D. +0.3 +0.1 +0.4 -0.4
phage V2_100 N.D. -0.2 -0.1 +0.9 -0.1
carbon source L-Alanine (C) N.D. -0.3 +0.2 +0.2 +0.5
carbon source L-Fucose (C) N.D. +0.4 +0.1 +0.6 -0.5
carbon source L-Fucose (C) N.D. -0.2 -0.1 +0.1 +0.9
carbon source 2-Deoxy-D-Ribose (C) N.D. +0.5 +0.3 +0.4 -0.2
carbon source D-Galactose (C) N.D. +0.2 +0.1 +0.8 -0.2
carbon source Ethanol (C) N.D. +0.4 +0.4 -0.2 +0.3
carbon source L-Lactate (C) N.D. +0.7 -0.1 +0.3 +0.1
carbon source D,L-Malic Acid (C) N.D. +0.2 +0.5 +0.4 -0.2
carbon source L-Phenylalanine (C) N.D. +0.4 -0.1 +0.3 +0.4
carbon source D-Fructose (C) N.D. +0.4 -0.3 +0.6 +0.3
carbon source acetate (C) N.D. +0.3 +0.3 +0.4 +0.3
r2a outgrowth control R2A outgrowth control N.D. +0.4 +0.0 +0.3 +0.6
carbon source propionate (C) N.D. +0.4 +0.2 +0.3 +0.6
carbon source D-Glucose (C) N.D. +0.4 +0.0 +0.5 +0.4
carbon source L-Glutamine (C) N.D. +0.4 +0.2 +0.5 +0.5
carbon source Tween 20 (C) N.D. +0.7 +0.0 +0.3 +0.6
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