Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS09275 and ABID97_RS09280 are separated by 38 nucleotidesABID97_RS09280 and ABID97_RS09285 are separated by 91 nucleotidesABID97_RS09285 and ABID97_RS09290 are separated by 96 nucleotidesABID97_RS09290 and ABID97_RS09295 are separated by 5 nucleotides ABID97_RS09275: ABID97_RS09275 - polyprenyl synthetase family protein, at 1,948,755 to 1,949,669 _RS09275 ABID97_RS09280: ABID97_RS09280 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,949,708 to 1,951,591 _RS09280 ABID97_RS09285: ABID97_RS09285 - TRAP transporter substrate-binding protein, at 1,951,683 to 1,952,765 _RS09285 ABID97_RS09290: ABID97_RS09290 - hypothetical protein, at 1,952,862 to 1,953,332 _RS09290 ABID97_RS09295: ABID97_RS09295 - TRAP transporter large permease subunit, at 1,953,338 to 1,954,867 _RS09295
Group Condition ABID97_RS09275 ABID97_RS09280 ABID97_RS09285 ABID97_RS09290 ABID97_RS09295
carbon source D-Glucuronic Acid (C) -2.6 N.D. +0.0 -0.1 -0.2
plant outgrowth control Plant outgrowth control -1.8 N.D. -0.2 -0.3 -0.2
plant outgrowth control Plant outgrowth control -1.3 N.D. -0.2 -0.2 -0.0
carbon source Tween 20 (C) -1.1 N.D. -0.2 -0.2 -0.0
carbon source Gly-Glu (C) -1.6 N.D. +0.0 +0.1 +0.1
carbon source L-Lactate (C) -1.1 N.D. +0.1 -0.2 +0.0
control NP -1.0 N.D. +0.0 -0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 N.D. +0.2 -0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 N.D. +0.1 +0.6 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 N.D. -0.0 +0.3 -0.3
carbon source L-Malic (C) -1.0 N.D. +0.1 +0.1 -0.0
carbon source Formate (C) +0.6 N.D. -0.1 -0.6 -0.3
carbon source Glycolic Acid (C) -0.7 N.D. +0.2 +0.2 +0.2
carbon source L-tyrosine (C) +0.8 N.D. -0.1 -0.3 -0.4
carbon source Glucuronamide (C) +1.0 N.D. -0.1 -0.1 -0.2
carbon source D-Fructose (C) +1.1 N.D. +0.0 -0.3 +0.0
carbon source Glucuronamide (C) +1.2 N.D. +0.0 -0.1 -0.3
carbon source Ethanol (C) +1.1 N.D. +0.2 -0.3 +0.1
carbon source L-Fucose (C) +0.8 N.D. +0.2 +0.1 -0.2
carbon source Ethanol (C) +1.2 N.D. +0.1 -0.1 -0.2
carbon source D,L-Malic Acid (C) +1.2 N.D. -0.2 +0.2 -0.1
carbon source L-Phenylalanine (C) +1.1 N.D. +0.2 -0.0 +0.0
carbon source D-Serine (C) +1.2 N.D. +0.0 +0.1 +0.1
carbon source D-Fructose (C) +1.2 N.D. +0.0 +0.1 +0.1
carbon source Glycolic Acid (C) -0.1 N.D. +0.6 +0.4 +0.6
carbon source L-Phenylalanine (C) +1.2 N.D. +0.4 -0.0 +0.2
carbon source D-Serine (C) +1.4 N.D. +0.1 +0.3 +0.1
carbon source butyrate (C) +2.6 N.D. -0.1 -0.3 -0.1
phage V2_100 +2.5 N.D. +0.2 +0.2 -0.1
carbon source butyrate (C) +3.3 N.D. +0.1 +0.1 -0.2
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ABID97_RS09275
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ABID97_RS09280
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ABID97_RS09295
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