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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS09235 and ABID97_RS09240 are separated by 4 nucleotides
ABID97_RS09240 and ABID97_RS09245 overlap by 4 nucleotides
ABID97_RS09245 and ABID97_RS09250 are separated by 4 nucleotides
ABID97_RS09250 and ABID97_RS09255 overlap by 4 nucleotides
ABID97_RS09235: ABID97_RS09235 - DUF3299 domain-containing protein, at 1,941,961 to 1,942,599
_RS09235
ABID97_RS09240: ABID97_RS09240 - FtsX-like permease family protein, at 1,942,604 to 1,943,866
_RS09240
ABID97_RS09245: ABID97_RS09245 - ABC transporter ATP-binding protein, at 1,943,863 to 1,944,597
_RS09245
ABID97_RS09250: ABID97_RS09250 - DUF2796 domain-containing protein, at 1,944,602 to 1,945,183
_RS09250
ABID97_RS09255: ABID97_RS09255 - sulfurtransferase, at 1,945,180 to 1,946,088
_RS09255
Group
Condition
ABID97
_RS09235
ABID97
_RS09240
ABID97
_RS09245
ABID97
_RS09250
ABID97
_RS09255
carbon source
Gly-Glu (C)
N.D.
-1.8
N.D.
N.D.
-0.4
carbon source
Gly-Glu (C)
N.D.
-1.5
N.D.
N.D.
+0.2
carbon source
Tween 20 (C)
N.D.
-0.3
N.D.
N.D.
-0.8
carbon source
propionate (C)
N.D.
-0.3
N.D.
N.D.
-0.7
carbon source
Formate (C)
N.D.
-0.2
N.D.
N.D.
-0.8
carbon source
L-Tryptophan (C)
N.D.
-0.3
N.D.
N.D.
-0.6
carbon source
D,L-Malic Acid (C)
N.D.
+0.1
N.D.
N.D.
-0.9
carbon source
D-Arabinose (C)
N.D.
-0.1
N.D.
N.D.
-0.7
carbon source
Glycolic Acid (C)
N.D.
-0.2
N.D.
N.D.
-0.6
carbon source
L-Proline (C)
N.D.
-0.2
N.D.
N.D.
-0.6
carbon source
L-Fucose (C)
N.D.
-0.3
N.D.
N.D.
-0.5
carbon source
Glycerol (C)
N.D.
-0.6
N.D.
N.D.
-0.2
carbon source
D-Glucuronic Acid (C)
N.D.
-0.1
N.D.
N.D.
-0.7
carbon source
D-Galactose (C)
N.D.
-0.2
N.D.
N.D.
-0.5
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.2
N.D.
N.D.
-0.8
carbon source
Adenine (C)
N.D.
-0.1
N.D.
N.D.
-0.6
carbon source
L-Leucine (C)
N.D.
-0.3
N.D.
N.D.
-0.4
carbon source
L-Lactate (C)
N.D.
+0.0
N.D.
N.D.
-0.6
carbon source
D-Serine (C)
N.D.
+0.2
N.D.
N.D.
-0.6
phage
V1_10
N.D.
-0.6
N.D.
N.D.
+0.3
carbon source
L-Malic (C)
N.D.
+0.3
N.D.
N.D.
-0.5
plant outgrowth control
Plant outgrowth control
N.D.
+0.2
N.D.
N.D.
-0.4
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
+0.4
N.D.
N.D.
-0.6
carbon source
D-Fructose (C)
N.D.
-0.4
N.D.
N.D.
+0.2
carbon source
2-Deoxy-D-Ribose (C)
N.D.
+0.3
N.D.
N.D.
-0.4
carbon source
D-Glucose (C)
N.D.
+0.3
N.D.
N.D.
-0.3
carbon source
a-Ketoglutaric (C)
N.D.
-0.4
N.D.
N.D.
+0.3
plant outgrowth control
Plant outgrowth control
N.D.
+0.4
N.D.
N.D.
-0.3
carbon source
D-Ribose (C)
N.D.
+0.5
N.D.
N.D.
-0.4
carbon source
L-Histidine (C)
N.D.
+0.5
N.D.
N.D.
-0.2
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