Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS08900 and ABID97_RS08905 overlap by 4 nucleotidesABID97_RS08905 and ABID97_RS08910 are separated by 82 nucleotidesABID97_RS08910 and ABID97_RS08915 overlap by 11 nucleotidesABID97_RS08915 and ABID97_RS08920 are separated by 88 nucleotides ABID97_RS08900: ABID97_RS08900 - branched-chain amino acid ABC transporter permease, at 1,864,661 to 1,865,716 _RS08900 ABID97_RS08905: ABID97_RS08905 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 1,865,713 to 1,867,512 _RS08905 ABID97_RS08910: ABID97_RS08910 - ABC transporter ATP-binding protein, at 1,867,595 to 1,868,326 _RS08910 ABID97_RS08915: ABID97_RS08915 - ATP-dependent acyl-CoA ligase, at 1,868,316 to 1,869,917 _RS08915 ABID97_RS08920: ABID97_RS08920 - SDR family NAD(P)-dependent oxidoreductase, at 1,870,006 to 1,870,782 _RS08920
Group Condition ABID97_RS08900 ABID97_RS08905 ABID97_RS08910 ABID97_RS08915 ABID97_RS08920
carbon source L-Tryptophan (C) +0.4 +0.0 -0.5 -0.2 -2.7
carbon source L-Tryptophan (C) -0.1 +0.1 -0.2 +0.1 -2.5
carbon source D-Glucose (C) +0.1 -0.6 -1.0 -0.2 -0.2
carbon source D-Lactate (C) -0.2 -0.4 -0.2 -0.3 -0.3
phage V2_100 -0.6 +1.1 -1.0 -0.4 -0.4
carbon source propionate (C) -0.6 +0.2 -0.2 -0.0 -0.3
carbon source butyrate (C) -0.1 -0.7 -0.1 -0.2 +0.4
phage V2_10 +0.3 +0.3 -0.6 -0.3 -0.1
carbon source D-Glucuronic Acid (C) +0.3 -0.8 +0.1 +0.3 -0.2
carbon source L-Alanine (C) -0.3 +0.4 -0.4 -0.0 +0.3
carbon source L-Leucine (C) +0.5 -0.5 +0.2 -0.1 -0.1
carbon source D-Galactose (C) +0.2 -0.6 +0.2 +0.3 +0.0
carbon source casaminos (C) -0.5 -0.2 +0.3 +0.3 +0.3
carbon source D-Mannose (C) -0.7 +0.3 +0.4 +0.0 +0.2
carbon source D-Arabinose (C) +0.8 +0.1 -0.4 -0.0 -0.2
carbon source acetate (C) +0.2 +0.4 -0.5 -0.0 +0.2
carbon source Ethanol (C) +0.7 -0.7 +0.2 -0.0 +0.2
r2a outgrowth control R2A outgrowth control +0.3 -0.8 +0.9 +0.2 +0.1
carbon source Adenine (C) +0.2 +0.4 -0.4 +0.3 +0.1
r2a outgrowth control R2A outgrowth control +0.3 -0.5 +0.8 -0.0 +0.3
plant outgrowth control Plant outgrowth control -0.1 +0.0 +0.8 -0.2 +0.4
carbon source L-Histidine (C) +0.4 -0.3 +0.5 +0.5 -0.1
carbon source Formate (C) +0.3 -0.2 +0.7 +0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.2 +0.1 -0.3 +0.8
carbon source casaminos (C) +0.2 -0.1 +0.6 +0.1 +0.4
carbon source L-tyrosine (C) +0.2 +0.6 +0.1 +0.4 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.9 +0.6 +0.1 +0.1 -0.2
carbon source L-Arabinose (C) +0.4 +0.5 +0.3 +0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.1 +0.9 +0.0 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.6 +1.3 +0.0 +0.6
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