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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS08440 and ABID97_RS08445 are separated by 27 nucleotides
ABID97_RS08445 and ABID97_RS08450 are separated by 167 nucleotides
ABID97_RS08450 and ABID97_RS08455 are separated by 92 nucleotides
ABID97_RS08455 and ABID97_RS08460 are separated by 40 nucleotides
ABID97_RS08440: ABID97_RS08440 - tRNA pseudouridine(38-40) synthase TruA, at 1,771,689 to 1,772,501
_RS08440
ABID97_RS08445: ABID97_RS08445 - FimV/HubP family polar landmark protein, at 1,772,529 to 1,775,330
_RS08445
ABID97_RS08450: ABID97_RS08450 - aspartate-semialdehyde dehydrogenase, at 1,775,498 to 1,776,640
_RS08450
ABID97_RS08455: ABID97_RS08455 - 3-isopropylmalate dehydrogenase, at 1,776,733 to 1,777,821
_RS08455
ABID97_RS08460: ABID97_RS08460 - 3-isopropylmalate dehydratase small subunit, at 1,777,862 to 1,778,512
_RS08460
Group
Condition
ABID97
_RS08440
ABID97
_RS08445
ABID97
_RS08450
ABID97
_RS08455
ABID97
_RS08460
carbon source
Adenine (C)
-2.6
-2.7
N.D.
N.D.
N.D.
carbon source
Adenine (C)
-2.5
-2.6
N.D.
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-1.8
-2.1
N.D.
N.D.
N.D.
carbon source
D-Lactate (C)
-1.4
-2.5
N.D.
N.D.
N.D.
carbon source
Fumarate (C)
-1.5
-2.3
N.D.
N.D.
N.D.
carbon source
L-Tryptophan (C)
-1.4
-2.4
N.D.
N.D.
N.D.
carbon source
succinate (C)
-1.2
-2.5
N.D.
N.D.
N.D.
carbon source
Gly-Glu (C)
-1.2
-2.4
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
-1.7
-1.9
N.D.
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-1.1
-2.5
N.D.
N.D.
N.D.
carbon source
acetate (C)
-1.7
-1.9
N.D.
N.D.
N.D.
carbon source
Gly-Glu (C)
-1.4
-2.1
N.D.
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-0.9
-2.7
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
-1.2
-2.2
N.D.
N.D.
N.D.
carbon source
L-Tryptophan (C)
-1.4
-2.0
N.D.
N.D.
N.D.
carbon source
succinate (C)
-0.8
-2.5
N.D.
N.D.
N.D.
carbon source
D-Glucose (C)
-1.7
-1.6
N.D.
N.D.
N.D.
carbon source
D-Arabinose (C)
-1.1
-2.1
N.D.
N.D.
N.D.
carbon source
Glycolic Acid (C)
-1.9
-1.3
N.D.
N.D.
N.D.
carbon source
L-Lactate (C)
-1.3
-1.9
N.D.
N.D.
N.D.
carbon source
D-Sorbitol (C)
-1.7
-1.4
N.D.
N.D.
N.D.
carbon source
Tween 20 (C)
-1.2
-1.9
N.D.
N.D.
N.D.
carbon source
Fumarate (C)
-1.0
-2.1
N.D.
N.D.
N.D.
carbon source
L-Lactate (C)
-1.2
-2.0
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
-0.9
-2.1
N.D.
N.D.
N.D.
phage
V1_10
-0.3
+3.1
N.D.
N.D.
N.D.
phage
V2_10
-0.4
+3.3
N.D.
N.D.
N.D.
phage
V1_10
-0.3
+3.2
N.D.
N.D.
N.D.
phage
V2_10
+0.1
+3.2
N.D.
N.D.
N.D.
phage
V2_100
-1.1
+6.4
N.D.
N.D.
N.D.
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