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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS08345 and ABID97_RS08350 are separated by 522 nucleotides
ABID97_RS08350 and ABID97_RS08355 are separated by 8 nucleotides
ABID97_RS08355 and ABID97_RS08360 are separated by 31 nucleotides
ABID97_RS08360 and ABID97_RS08365 are separated by 17 nucleotides
ABID97_RS08345: ABID97_RS08345 - DegQ family serine endoprotease, at 1,753,171 to 1,754,667
_RS08345
ABID97_RS08350: ABID97_RS08350 - translation elongation factor 4, at 1,755,190 to 1,757,001
_RS08350
ABID97_RS08355: ABID97_RS08355 - signal peptidase I, at 1,757,010 to 1,757,975
_RS08355
ABID97_RS08360: ABID97_RS08360 - DUF4845 domain-containing protein, at 1,758,007 to 1,758,375
_RS08360
ABID97_RS08365: ABID97_RS08365 - ribonuclease III, at 1,758,393 to 1,759,079
_RS08365
Group
Condition
ABID97
_RS08345
ABID97
_RS08350
ABID97
_RS08355
ABID97
_RS08360
ABID97
_RS08365
carbon source
D,L-Malic Acid (C)
-1.3
-0.7
N.D.
-1.4
-1.9
carbon source
D-Ribose (C)
+0.4
-0.8
N.D.
-1.4
-2.5
carbon source
D-Ribose (C)
+0.2
-0.8
N.D.
-1.1
-1.8
carbon source
D-Xylose (C)
-0.1
-1.0
N.D.
-0.4
-2.0
carbon source
D-Xylose (C)
-0.1
-0.8
N.D.
-0.4
-2.1
carbon source
Glycerol (C)
+0.2
-0.3
N.D.
-1.3
-2.0
carbon source
L-Asparagine (C)
+0.2
-1.0
N.D.
-1.2
-1.3
carbon source
casaminos (C)
+0.2
-1.1
N.D.
-1.3
-1.0
carbon source
D-Arabinose (C)
-0.2
-1.0
N.D.
-1.1
-0.9
carbon source
Fumarate (C)
+0.1
-1.1
N.D.
-1.0
-1.1
carbon source
D-Fructose (C)
+0.5
-1.1
N.D.
-0.8
-1.7
carbon source
L-Malic (C)
+0.1
-1.2
N.D.
-1.2
-0.7
carbon source
D-Galactose (C)
+0.2
-0.8
N.D.
-1.1
-1.1
carbon source
D-Gluconic Acid (C)
-0.2
-0.4
N.D.
-1.9
+1.3
carbon source
D-Glucose (C)
-0.0
-0.6
N.D.
+1.0
-1.6
carbon source
2-Deoxy-D-Ribose (C)
+0.3
-0.9
N.D.
+0.8
-1.1
carbon source
D-Glucose (C)
+0.2
-0.5
N.D.
+1.1
-1.4
carbon source
D-Gluconic Acid (C)
-0.1
-0.4
N.D.
-1.4
+1.5
carbon source
Adenine (C)
-0.0
-0.3
N.D.
-1.5
+1.4
carbon source
Glucuronamide (C)
-0.0
-0.5
N.D.
-1.1
+1.5
carbon source
D-Glucuronic Acid (C)
-0.6
-0.7
N.D.
+0.3
+1.9
phage
V1_10
-0.0
+0.6
N.D.
+1.4
-1.0
phage
V2_10
-0.3
+0.6
N.D.
+2.0
-1.0
phage
V1_10
+0.0
+0.6
N.D.
+1.6
-0.9
phage
V2_10
-0.3
+0.6
N.D.
+1.9
-0.6
carbon source
L-Phenylalanine (C)
+0.4
+1.1
N.D.
+1.3
+0.8
carbon source
L-Phenylalanine (C)
+0.6
+1.1
N.D.
+1.7
+0.9
phage
V2_100
-0.2
+1.1
N.D.
+3.0
+0.5
carbon source
butyrate (C)
-0.1
-0.5
N.D.
+0.1
+5.7
carbon source
butyrate (C)
-0.1
-0.4
N.D.
-0.0
+6.7
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