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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS08310 and ABID97_RS08315 are separated by 99 nucleotides
ABID97_RS08315 and ABID97_RS08320 are separated by 96 nucleotides
ABID97_RS08320 and ABID97_RS08325 are separated by 31 nucleotides
ABID97_RS08325 and ABID97_RS08330 are separated by 9 nucleotides
ABID97_RS08310: ABID97_RS08310 - 3-oxoacyl-ACP reductase FabG, at 1,747,697 to 1,748,443
_RS08310
ABID97_RS08315: ABID97_RS08315 - acyl carrier protein, at 1,748,543 to 1,748,782
_RS08315
ABID97_RS08320: ABID97_RS08320 - beta-ketoacyl-ACP synthase II, at 1,748,879 to 1,750,123
_RS08320
ABID97_RS08325: ABID97_RS08325 - hypothetical protein, at 1,750,155 to 1,750,619
_RS08325
ABID97_RS08330: ABID97_RS08330 - RNA polymerase sigma factor RpoE, at 1,750,629 to 1,751,303
_RS08330
Group
Condition
ABID97
_RS08310
ABID97
_RS08315
ABID97
_RS08320
ABID97
_RS08325
ABID97
_RS08330
carbon source
D,L-Malic Acid (C)
N.D.
N.D.
N.D.
-0.2
-3.3
carbon source
L-Malic (C)
N.D.
N.D.
N.D.
-0.2
-1.6
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
+0.0
-1.8
carbon source
L-Malic (C)
N.D.
N.D.
N.D.
-0.2
-1.4
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
N.D.
N.D.
-0.0
-1.5
carbon source
L-Phenylalanine (C)
N.D.
N.D.
N.D.
-0.2
-1.2
carbon source
Tween 20 (C)
N.D.
N.D.
N.D.
-0.3
-1.1
plant outgrowth control
Plant outgrowth control
N.D.
N.D.
N.D.
-0.1
-1.1
carbon source
D-Arabinose (C)
N.D.
N.D.
N.D.
-0.3
-0.8
carbon source
2-Deoxy-D-Ribose (C)
N.D.
N.D.
N.D.
-0.3
-0.8
carbon source
L-Phenylalanine (C)
N.D.
N.D.
N.D.
-0.1
-1.1
carbon source
Adenine (C)
N.D.
N.D.
N.D.
-0.3
-0.8
carbon source
Gly-Glu (C)
N.D.
N.D.
N.D.
-0.0
-1.1
carbon source
Glucuronamide (C)
N.D.
N.D.
N.D.
-0.5
-0.6
carbon source
Adenine (C)
N.D.
N.D.
N.D.
-0.1
-0.9
carbon source
L-Arabinose (C)
N.D.
N.D.
N.D.
-0.2
-0.8
carbon source
D-Arabinose (C)
N.D.
N.D.
N.D.
-0.1
-0.8
carbon source
Glycerol (C)
N.D.
N.D.
N.D.
-0.1
-0.9
carbon source
Gly-Glu (C)
N.D.
N.D.
N.D.
+0.2
-1.1
carbon source
D-Sorbitol (C)
N.D.
N.D.
N.D.
-0.3
-0.7
plant outgrowth control
Plant outgrowth control
N.D.
N.D.
N.D.
+0.3
-1.2
carbon source
D-Sorbitol (C)
N.D.
N.D.
N.D.
-0.3
-0.6
carbon source
Tween 20 (C)
N.D.
N.D.
N.D.
+0.1
-0.8
carbon source
Glycerol (C)
N.D.
N.D.
N.D.
+0.1
-0.8
carbon source
L-tyrosine (C)
N.D.
N.D.
N.D.
+0.1
-0.8
carbon source
L-Lactate (C)
N.D.
N.D.
N.D.
+0.1
-0.7
carbon source
D,L-Malic Acid (C)
N.D.
N.D.
N.D.
+0.4
-0.7
carbon source
D-Glucuronic Acid (C)
N.D.
N.D.
N.D.
+0.3
-0.6
phage
V2_10
N.D.
N.D.
N.D.
+0.2
+0.6
phage
V2_10
N.D.
N.D.
N.D.
+0.3
+0.8
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