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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS08180 and ABID97_RS08185 are separated by 13 nucleotides
ABID97_RS08185 and ABID97_RS08190 are separated by 13 nucleotides
ABID97_RS08190 and ABID97_RS08195 are separated by 22 nucleotides
ABID97_RS08195 and ABID97_RS08200 overlap by 4 nucleotides
ABID97_RS08180: ABID97_RS08180 - hypothetical protein, at 1,717,449 to 1,718,751
_RS08180
ABID97_RS08185: ABID97_RS08185 - rhomboid family intramembrane serine protease, at 1,718,765 to 1,720,241
_RS08185
ABID97_RS08190: ABID97_RS08190 - argininosuccinate lyase, at 1,720,255 to 1,721,652
_RS08190
ABID97_RS08195: ABID97_RS08195 - histidine kinase, at 1,721,675 to 1,722,775
_RS08195
ABID97_RS08200: ABID97_RS08200 - LytTR family DNA-binding domain-containing protein, at 1,722,772 to 1,723,518
_RS08200
Group
Condition
ABID97
_RS08180
ABID97
_RS08185
ABID97
_RS08190
ABID97
_RS08195
ABID97
_RS08200
carbon source
L-Arabinose (C)
+0.1
+0.1
N.D.
-1.6
-1.5
carbon source
D-Arabinose (C)
-0.2
-0.1
N.D.
-1.2
-1.2
carbon source
L-Glutamine (C)
+0.1
-0.0
N.D.
-1.3
-1.5
carbon source
L-Malic (C)
-0.0
-0.0
N.D.
-1.3
-1.2
carbon source
L-Arabinose (C)
-0.1
-0.0
N.D.
-1.0
-1.4
carbon source
butyrate (C)
+0.0
+0.1
N.D.
-1.7
-0.9
carbon source
L-Glutamine (C)
+0.2
-0.1
N.D.
-1.5
-1.1
carbon source
L-Alanine (C)
-0.1
-0.0
N.D.
-1.1
-1.2
carbon source
D,L-Lactate (C)
-0.0
-0.2
N.D.
-1.2
-1.0
carbon source
L-Lactate (C)
-0.0
+0.0
N.D.
-1.3
-1.0
carbon source
pyruvate (C)
-0.1
-0.0
N.D.
-0.8
-1.3
carbon source
Glucuronamide (C)
+0.1
-0.0
N.D.
-1.5
-0.9
carbon source
L-Glutamic (C)
+0.0
-0.1
N.D.
-1.0
-1.3
carbon source
pyruvate (C)
+0.1
-0.1
N.D.
-1.0
-1.2
carbon source
L-Malic (C)
-0.0
-0.1
N.D.
-0.9
-1.2
carbon source
L-Asparagine (C)
-0.1
-0.1
N.D.
-0.8
-1.2
carbon source
D-Lactate (C)
+0.1
+0.2
N.D.
-1.1
-1.3
carbon source
D-Galactose (C)
+0.0
-0.1
N.D.
-1.3
-0.8
carbon source
Gly-Glu (C)
+0.2
-0.1
N.D.
-1.1
-1.0
carbon source
propionate (C)
+0.5
+0.0
N.D.
-1.2
-1.2
carbon source
D,L-Malic Acid (C)
+0.2
-0.1
N.D.
-1.0
-0.8
carbon source
D-Glucose (C)
-0.0
-0.0
N.D.
+1.4
+1.5
carbon source
L-Phenylalanine (C)
-0.1
-0.0
N.D.
+1.5
+1.4
carbon source
D-Glucose (C)
-0.2
+0.0
N.D.
+1.6
+1.5
carbon source
L-Phenylalanine (C)
+0.0
-0.1
N.D.
+1.7
+1.8
phage
V1_10
-0.3
-0.3
N.D.
+2.2
+2.2
phage
V1_10
-0.1
+0.0
N.D.
+2.2
+2.2
phage
V2_10
-0.0
+0.0
N.D.
+2.4
+2.5
phage
V2_10
-0.1
-0.0
N.D.
+2.6
+2.6
phage
V2_100
+0.1
+0.0
N.D.
+4.9
+4.7
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