Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS07975 and ABID97_RS07980 are separated by 119 nucleotidesABID97_RS07980 and ABID97_RS07985 are separated by 79 nucleotidesABID97_RS07985 and ABID97_RS07990 are separated by 10 nucleotidesABID97_RS07990 and ABID97_RS07995 are separated by 7 nucleotides ABID97_RS07975: ABID97_RS07975 - DNA topoisomerase IB, at 1,675,885 to 1,677,171 _RS07975 ABID97_RS07980: ABID97_RS07980 - purine nucleoside permease, at 1,677,291 to 1,678,358 _RS07980 ABID97_RS07985: ABID97_RS07985 - aspartate carbamoyltransferase, at 1,678,438 to 1,679,715 _RS07985 ABID97_RS07990: ABID97_RS07990 - TIGR02117 family protein, at 1,679,726 to 1,680,400 _RS07990 ABID97_RS07995: ABID97_RS07995 - DNA polymerase IV, at 1,680,408 to 1,681,655 _RS07995
Group Condition ABID97_RS07975 ABID97_RS07980 ABID97_RS07985 ABID97_RS07990 ABID97_RS07995
carbon source Ethanol (C) -0.3 -0.0 -0.3 -0.3 +0.0
carbon source L-tyrosine (C) +0.1 +0.2 -0.0 -0.6 -0.0
carbon source D-Glucose (C) -0.3 +0.1 -0.2 -0.1 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.2 +0.3 -0.0 -0.7 +0.1
carbon source Adenine (C) -0.1 +0.3 +0.1 -0.4 +0.0
carbon source L-Glutamine (C) +0.0 +0.4 +0.1 -0.4 -0.2
carbon source Glucuronamide (C) -0.3 +0.2 -0.1 +0.1 +0.1
carbon source D-Gluconic Acid (C) -0.2 +0.2 +0.1 -0.1 +0.1
carbon source D-Ribose (C) +0.2 +0.3 -0.3 +0.1 -0.0
carbon source propionate (C) -0.4 +0.3 +0.2 +0.1 +0.1
carbon source D,L-Lactate (C) -0.1 +0.1 +0.1 +0.4 -0.1
phage V2_100 +0.0 +0.1 -0.2 +0.3 +0.2
carbon source butyrate (C) -0.1 -0.0 +0.1 +0.2 +0.3
carbon source casaminos (C) -0.2 +0.2 +0.2 +0.1 +0.1
carbon source L-tyrosine (C) -0.0 +0.2 +0.1 +0.3 -0.1
carbon source D-Serine (C) +0.1 +0.1 +0.1 +0.3 -0.1
carbon source Fumarate (C) +0.2 +0.3 -0.0 +0.2 -0.0
carbon source D-Xylose (C) -0.0 +0.3 +0.2 +0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.2 -0.0 +0.2 +0.4
carbon source casaminos (C) -0.1 +0.3 +0.1 +0.2 +0.1
carbon source Glycolic Acid (C) +0.3 -0.1 +0.3 -0.0 +0.1
carbon source D-Galactose (C) +0.1 +0.1 -0.0 +0.3 +0.1
carbon source L-Leucine (C) +0.1 +0.2 +0.1 +0.3 -0.0
carbon source D,L-Malic Acid (C) +0.3 +0.2 +0.2 -0.0 +0.1
carbon source L-Threonine (C) +0.2 +0.2 +0.3 +0.2 -0.1
carbon source D-Glucose (C) -0.0 -0.0 +0.2 +0.4 +0.3
carbon source a-Ketoglutaric (C) +0.1 +0.2 +0.1 +0.4 +0.3
r2a outgrowth control R2A outgrowth control +0.2 +0.2 +0.2 +0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.1 +0.6 +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.1 +0.4 +0.1 +0.3
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ABID97_RS07975
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ABID97_RS07980
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ABID97_RS07990
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