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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS07800 and ABID97_RS07805 are separated by 201 nucleotides
ABID97_RS07805 and ABID97_RS07810 are separated by 11 nucleotides
ABID97_RS07810 and ABID97_RS07815 are separated by 170 nucleotides
ABID97_RS07815 and ABID97_RS07820 are separated by 186 nucleotides
ABID97_RS07800: ABID97_RS07800 - fatty acid desaturase, at 1,639,622 to 1,640,836
_RS07800
ABID97_RS07805: ABID97_RS07805 - 50S ribosomal protein L33, at 1,641,038 to 1,641,211
_RS07805
ABID97_RS07810: ABID97_RS07810 - 50S ribosomal protein L28, at 1,641,223 to 1,641,456
_RS07810
ABID97_RS07815: ABID97_RS07815 - thioredoxin-disulfide reductase, at 1,641,627 to 1,642,586
_RS07815
ABID97_RS07820: ABID97_RS07820 - Crp/Fnr family transcriptional regulator, at 1,642,773 to 1,643,447
_RS07820
Group
Condition
ABID97
_RS07800
ABID97
_RS07805
ABID97
_RS07810
ABID97
_RS07815
ABID97
_RS07820
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
-0.6
N.D.
N.D.
-1.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
-1.2
N.D.
N.D.
-0.5
control
NP
N.D.
-1.1
N.D.
N.D.
-0.4
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
-1.4
N.D.
N.D.
-0.1
phage
V1_1
N.D.
-0.8
N.D.
N.D.
-0.5
phage
V2_1
N.D.
-0.8
N.D.
N.D.
-0.5
phage
V2_10
N.D.
-0.7
N.D.
N.D.
-0.6
phage
V1_1
N.D.
-0.6
N.D.
N.D.
-0.6
carbon source
Tween 20 (C)
N.D.
-1.1
N.D.
N.D.
+0.0
carbon source
L-Glutamic (C)
N.D.
-1.0
N.D.
N.D.
+0.1
carbon source
Glycerol (C)
N.D.
-1.1
N.D.
N.D.
+0.2
carbon source
acetate (C)
N.D.
-0.9
N.D.
N.D.
+0.3
carbon source
L-Threonine (C)
N.D.
-0.7
N.D.
N.D.
+0.5
carbon source
Glycolic Acid (C)
N.D.
-0.4
N.D.
N.D.
+0.8
carbon source
L-tyrosine (C)
N.D.
-0.3
N.D.
N.D.
+1.1
carbon source
Ethanol (C)
N.D.
+0.5
N.D.
N.D.
+0.7
carbon source
L-Histidine (C)
N.D.
+0.4
N.D.
N.D.
+0.8
carbon source
D-Gluconic Acid (C)
N.D.
+0.3
N.D.
N.D.
+0.9
carbon source
2-Deoxy-D-Ribose (C)
N.D.
+0.3
N.D.
N.D.
+1.2
carbon source
D-Xylose (C)
N.D.
+0.5
N.D.
N.D.
+1.1
carbon source
L-Tryptophan (C)
N.D.
+0.4
N.D.
N.D.
+1.2
carbon source
a-Ketoglutaric (C)
N.D.
+1.0
N.D.
N.D.
+0.6
carbon source
D-Xylose (C)
N.D.
+0.5
N.D.
N.D.
+1.1
carbon source
2-Deoxy-D-Ribose (C)
N.D.
+0.5
N.D.
N.D.
+1.3
carbon source
D-Gluconic Acid (C)
N.D.
+0.7
N.D.
N.D.
+1.2
carbon source
L-Phenylalanine (C)
N.D.
+0.6
N.D.
N.D.
+2.8
carbon source
D-Glucose (C)
N.D.
+1.5
N.D.
N.D.
+2.3
carbon source
L-Phenylalanine (C)
N.D.
+0.6
N.D.
N.D.
+3.2
carbon source
D-Glucuronic Acid (C)
N.D.
+1.5
N.D.
N.D.
+2.3
carbon source
D-Glucose (C)
N.D.
+1.4
N.D.
N.D.
+2.9
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