Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS07625 and ABID97_RS07630 overlap by 4 nucleotidesABID97_RS07630 and ABID97_RS07635 overlap by 8 nucleotidesABID97_RS07635 and ABID97_RS07640 are separated by 2 nucleotidesABID97_RS07640 and ABID97_RS07645 are separated by 175 nucleotides ABID97_RS07625: ABID97_RS07625 - cytochrome o ubiquinol oxidase subunit IV, at 1,610,315 to 1,610,722 _RS07625 ABID97_RS07630: ABID97_RS07630 - cytochrome o ubiquinol oxidase subunit III, at 1,610,719 to 1,611,384 _RS07630 ABID97_RS07635: ABID97_RS07635 - cytochrome o ubiquinol oxidase subunit I, at 1,611,377 to 1,613,383 _RS07635 ABID97_RS07640: ABID97_RS07640 - ubiquinol oxidase subunit II, at 1,613,386 to 1,614,420 _RS07640 ABID97_RS07645: ABID97_RS07645 - MFS transporter, at 1,614,596 to 1,615,936 _RS07645
Group Condition ABID97_RS07625 ABID97_RS07630 ABID97_RS07635 ABID97_RS07640 ABID97_RS07645
carbon source D,L-Malic Acid (C) -0.7 -2.9 -1.7 -2.0 -0.1
phage V2_1 -0.7 -2.4 -2.4 -1.2 -0.2
phage V2_1 -0.8 -2.7 -2.1 -1.2 +0.1
control NP -1.0 -1.8 -2.3 -1.2 -0.1
phage V1_1 -0.4 -1.9 -2.0 -1.1 +0.0
phage V1_1 -0.2 -1.6 -2.1 -1.0 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -1.0 -1.0 -1.1 -0.6
carbon source Tween 20 (C) -0.4 -1.5 -1.0 -1.2 -0.2
carbon source L-Glutamine (C) -0.6 -1.7 -1.1 -1.1 +0.1
carbon source L-Arabinose (C) -0.9 -2.1 -0.6 -0.9 +0.1
carbon source L-Glutamic (C) -0.7 -1.3 -1.1 -1.3 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 -0.6 -1.1 -0.8 -0.4
carbon source L-Glutamic (C) -0.6 -1.7 -1.1 -0.9 +0.1
carbon source succinate (C) -0.7 -1.4 -0.9 -1.0 +0.1
plant outgrowth control Plant outgrowth control -1.1 -0.6 -0.9 -0.8 -0.4
r2a outgrowth control R2A outgrowth control -0.3 -1.3 -0.8 -0.9 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.6 -1.3 -0.6 -0.4
carbon source L-Glutamine (C) -0.4 -1.5 -1.0 -0.9 +0.1
carbon source pyruvate (C) -0.4 -1.2 -0.9 -0.8 -0.1
carbon source L-Malic (C) -0.4 -1.2 -0.9 -0.8 -0.1
carbon source L-Malic (C) -0.6 -1.1 -0.8 -0.8 +0.0
carbon source L-Asparagine (C) -0.4 -1.2 -0.6 -0.8 +0.1
carbon source L-Lactate (C) -0.6 -1.2 -0.8 -0.7 +0.3
carbon source D-Lactate (C) -0.5 -0.6 -1.0 -0.9 +0.1
phage V1_10 +0.1 -1.5 -0.9 -0.4 +0.2
carbon source L-Histidine (C) -0.7 -1.1 -0.3 -0.6 +0.5
carbon source 4-Hydroxybenzoic Acid (C) -0.7 +1.2 +1.0 +0.7 -1.1
carbon source butyrate (C) -0.0 -1.0 -0.7 -0.6 +3.9
carbon source butyrate (C) +0.0 -0.5 -0.7 -0.7 +4.0
phage V2_100 +2.1 +2.7 +2.4 +2.1 +1.0
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ABID97_RS07625
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ABID97_RS07630
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