Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS07280 and ABID97_RS07285 are separated by 10 nucleotidesABID97_RS07285 and ABID97_RS07290 are separated by 33 nucleotidesABID97_RS07290 and ABID97_RS07295 are separated by 7 nucleotidesABID97_RS07295 and ABID97_RS07300 overlap by 4 nucleotides ABID97_RS07280: ABID97_RS07280 - FmdB family zinc ribbon protein, at 1,545,124 to 1,545,465 _RS07280 ABID97_RS07285: ABID97_RS07285 - DUF502 domain-containing protein, at 1,545,476 to 1,546,096 _RS07285 ABID97_RS07290: ABID97_RS07290 - aspartate--tRNA ligase, at 1,546,130 to 1,547,935 _RS07290 ABID97_RS07295: ABID97_RS07295 - dihydroneopterin triphosphate diphosphatase, at 1,547,943 to 1,548,416 _RS07295 ABID97_RS07300: ABID97_RS07300 - endonuclease/exonuclease/phosphatase family protein, at 1,548,413 to 1,549,168 _RS07300
Group Condition ABID97_RS07280 ABID97_RS07285 ABID97_RS07290 ABID97_RS07295 ABID97_RS07300
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -4.2 N.D. -0.0 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -3.4 N.D. +0.0 -0.2
phage V1_1 N.D. -1.4 N.D. +0.1 -0.2
phage V1_10 N.D. -1.3 N.D. +0.0 -0.2
phage V2_100 N.D. -0.7 N.D. -0.2 -0.5
control NP N.D. -1.4 N.D. +0.0 +0.2
phage V2_1 N.D. -0.9 N.D. +0.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.3 N.D. +0.3 -0.1
phage V1_1 N.D. -0.9 N.D. -0.2 +0.1
r2a outgrowth control R2A outgrowth control N.D. -0.9 N.D. +0.1 +0.2
carbon source L-Histidine (C) N.D. +0.6 N.D. -0.3 +0.4
carbon source butyrate (C) N.D. +0.4 N.D. +0.5 -0.2
carbon source pyruvate (C) N.D. +0.8 N.D. +0.3 -0.3
carbon source L-Alanine (C) N.D. +0.8 N.D. +0.1 -0.2
carbon source D-Gluconic Acid (C) N.D. +0.7 N.D. +0.1 +0.1
carbon source Fumarate (C) N.D. +0.5 N.D. +0.1 +0.4
carbon source Glucuronamide (C) N.D. +1.1 N.D. +0.1 -0.1
carbon source D-Serine (C) N.D. +0.8 N.D. +0.2 +0.0
carbon source a-Ketoglutaric (C) N.D. +1.1 N.D. -0.1 +0.1
carbon source propionate (C) N.D. +1.1 N.D. +0.0 +0.1
carbon source Glucuronamide (C) N.D. +1.3 N.D. -0.0 -0.1
carbon source Adenine (C) N.D. +1.1 N.D. +0.2 -0.1
carbon source L-tyrosine (C) N.D. +1.0 N.D. +0.2 +0.1
carbon source L-Arabinose (C) N.D. +1.2 N.D. -0.1 +0.3
carbon source propionate (C) N.D. +1.2 N.D. +0.3 +0.1
carbon source D-Arabinose (C) N.D. +1.5 N.D. +0.1 +0.0
carbon source D-Arabinose (C) N.D. +1.5 N.D. -0.0 +0.2
carbon source L-Alanine (C) N.D. +1.6 N.D. +0.0 +0.1
carbon source L-Phenylalanine (C) N.D. +0.9 N.D. +1.5 +2.1
carbon source L-Phenylalanine (C) N.D. +1.0 N.D. +1.4 +2.2
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ABID97_RS07280
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ABID97_RS07285
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ABID97_RS07295
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ABID97_RS07300
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