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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS06720 and ABID97_RS06725 are separated by 40 nucleotides
ABID97_RS06725 and ABID97_RS06730 are separated by 161 nucleotides
ABID97_RS06730 and ABID97_RS06735 are separated by 16 nucleotides
ABID97_RS06735 and ABID97_RS06740 are separated by 8 nucleotides
ABID97_RS06720: ABID97_RS06720 - manganese catalase family protein, at 1,416,739 to 1,417,656
_RS06720
ABID97_RS06725: ABID97_RS06725 - NAD(P)/FAD-dependent oxidoreductase, at 1,417,697 to 1,418,623
_RS06725
ABID97_RS06730: ABID97_RS06730 - zinc-dependent alcohol dehydrogenase, at 1,418,785 to 1,419,966
_RS06730
ABID97_RS06735: ABID97_RS06735 - hypothetical protein, at 1,419,983 to 1,420,504
_RS06735
ABID97_RS06740: ABID97_RS06740 - hypothetical protein, at 1,420,513 to 1,421,070
_RS06740
Group
Condition
ABID97
_RS06720
ABID97
_RS06725
ABID97
_RS06730
ABID97
_RS06735
ABID97
_RS06740
carbon source
propionate (C)
+1.7
+0.1
-0.3
-3.3
+0.4
carbon source
butyrate (C)
-0.4
-0.1
+0.3
+0.1
-0.7
phage
V2_10
+0.2
+0.1
-0.2
-0.6
-0.2
carbon source
2-Deoxy-D-Ribose (C)
-0.0
-0.1
-0.1
-0.8
+0.4
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
-0.0
-0.3
-0.5
+0.1
carbon source
L-Malic (C)
-0.2
+0.1
-0.1
-0.5
+0.4
carbon source
D,L-Malic Acid (C)
-0.3
+0.1
+0.0
-0.5
+0.4
carbon source
L-Fucose (C)
-0.4
+0.1
-0.4
+0.6
-0.0
carbon source
L-Alanine (C)
-0.5
-0.1
-0.2
+0.3
+0.4
carbon source
D,L-Malic Acid (C)
+0.1
+0.3
-0.6
-0.2
+0.5
carbon source
D-Serine (C)
+0.4
+0.1
-0.1
-0.6
+0.4
carbon source
L-Arabinose (C)
-0.6
-0.0
-0.3
+1.2
+0.0
carbon source
Formate (C)
-0.3
-0.1
-0.1
+0.8
+0.1
carbon source
L-Fucose (C)
-0.4
+0.0
+0.0
+0.6
+0.1
carbon source
D-Sorbitol (C)
-0.4
+0.2
-0.2
+0.6
+0.3
carbon source
L-Histidine (C)
-0.6
+0.3
+0.1
+0.3
+0.5
carbon source
a-Ketoglutaric (C)
-0.0
+0.1
-0.3
+0.6
+0.3
carbon source
Adenine (C)
-0.3
-0.0
+0.0
+0.6
+0.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.2
+0.3
+0.2
+0.3
-0.3
carbon source
D-Galactose (C)
+0.2
+0.2
-0.2
+0.5
+0.3
carbon source
L-Threonine (C)
-0.5
+0.0
+0.0
+0.7
+0.6
carbon source
Glucuronamide (C)
-0.1
+0.1
+0.0
+0.8
+0.1
carbon source
D-Serine (C)
+0.0
+0.2
+0.3
+0.5
+0.1
carbon source
succinate (C)
+0.1
-0.1
+0.0
+0.6
+0.5
carbon source
Gly-Glu (C)
+0.2
+0.1
+0.0
+0.6
+0.3
carbon source
Tween 20 (C)
+0.0
+0.2
+0.0
+0.6
+0.5
carbon source
D-Ribose (C)
+0.4
+0.4
+0.1
-0.0
+0.7
carbon source
D-Ribose (C)
+0.3
+0.1
+0.0
+1.2
+0.2
carbon source
propionate (C)
+1.1
+0.3
-0.2
-0.1
+0.7
carbon source
L-tyrosine (C)
-0.4
+0.2
+0.1
+1.4
+0.9
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