Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS06655 and ABID97_RS06660 are separated by 117 nucleotidesABID97_RS06660 and ABID97_RS06665 are separated by 30 nucleotidesABID97_RS06665 and ABID97_RS06670 are separated by 128 nucleotidesABID97_RS06670 and ABID97_RS06675 are separated by 5 nucleotides ABID97_RS06655: ABID97_RS06655 - hypothetical protein, at 1,405,996 to 1,406,307 _RS06655 ABID97_RS06660: ABID97_RS06660 - helix-turn-helix transcriptional regulator, at 1,406,425 to 1,406,694 _RS06660 ABID97_RS06665: ABID97_RS06665 - GIY-YIG nuclease family protein, at 1,406,725 to 1,407,003 _RS06665 ABID97_RS06670: ABID97_RS06670 - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha, at 1,407,132 to 1,408,373 _RS06670 ABID97_RS06675: ABID97_RS06675 - alpha-ketoacid dehydrogenase subunit beta, at 1,408,379 to 1,409,392 _RS06675
Group Condition ABID97_RS06655 ABID97_RS06660 ABID97_RS06665 ABID97_RS06670 ABID97_RS06675
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.3 -0.6 -0.6 -0.0
carbon source D,L-Malic Acid (C) N.D. -0.5 -0.4 -0.5 +0.1
carbon source butyrate (C) N.D. -0.3 -0.3 -0.4 -0.1
carbon source L-tyrosine (C) N.D. -0.4 -0.3 -0.3 +0.2
carbon source Glucuronamide (C) N.D. -0.0 -0.2 -0.5 -0.1
carbon source Tween 20 (C) N.D. -0.1 -0.3 -0.4 +0.0
phage V2_10 N.D. -0.3 -0.3 -0.1 +0.1
carbon source D-Serine (C) N.D. -0.4 +0.2 -0.6 -0.0
carbon source L-Proline (C) N.D. +0.1 -0.5 -0.1 -0.1
phage V1_10 N.D. -0.4 -0.4 +0.1 +0.0
phage V1_10 N.D. +0.0 -0.5 -0.1 +0.2
phage V2_100 N.D. -0.4 -0.3 -0.2 +0.4
carbon source D,L-Lactate (C) N.D. +0.2 -0.4 -0.1 -0.1
carbon source L-Malic (C) N.D. +0.2 -0.2 -0.3 -0.1
carbon source Glucuronamide (C) N.D. -0.1 -0.5 +0.2 -0.1
phage V2_10 N.D. -0.4 -0.4 +0.3 +0.1
carbon source Adenine (C) N.D. -0.6 +0.3 -0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.2 -0.4 +0.0 -0.2
carbon source L-Asparagine (C) N.D. -0.2 -0.4 +0.2 -0.0
carbon source D-Xylose (C) N.D. +0.1 -0.4 -0.1 +0.1
carbon source L-Threonine (C) N.D. +0.4 -0.1 -0.4 -0.0
carbon source D-Serine (C) N.D. +0.0 +0.4 -0.3 +0.1
plant outgrowth control Plant outgrowth control N.D. +0.4 -0.0 -0.2 +0.2
carbon source propionate (C) N.D. +0.2 -0.4 +0.2 +0.3
carbon source L-Glutamine (C) N.D. +0.5 +0.2 -0.3 +0.0
carbon source L-Arabinose (C) N.D. +0.1 +0.4 -0.3 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.5 -0.1 +0.3 -0.1
carbon source butyrate (C) N.D. +0.0 +0.5 +0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +1.2 -0.5 +0.1 +0.3
r2a outgrowth control R2A outgrowth control N.D. +0.4 +0.4 +0.3 -0.0
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