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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS06415 and ABID97_RS06420 are separated by 26 nucleotides
ABID97_RS06420 and ABID97_RS06425 are separated by 17 nucleotides
ABID97_RS06425 and ABID97_RS06430 overlap by 4 nucleotides
ABID97_RS06430 and ABID97_RS06435 are separated by 116 nucleotides
ABID97_RS06415: ABID97_RS06415 - sigma-54 dependent transcriptional regulator, at 1,355,563 to 1,357,110
_RS06415
ABID97_RS06420: ABID97_RS06420 - ATP-binding protein, at 1,357,137 to 1,358,834
_RS06420
ABID97_RS06425: ABID97_RS06425 - PP0621 family protein, at 1,358,852 to 1,359,112
_RS06425
ABID97_RS06430: ABID97_RS06430 - cytochrome c biogenesis protein CcsA, at 1,359,109 to 1,359,918
_RS06430
ABID97_RS06435: ABID97_RS06435 - signal recognition particle protein, at 1,360,035 to 1,361,423
_RS06435
Group
Condition
ABID97
_RS06415
ABID97
_RS06420
ABID97
_RS06425
ABID97
_RS06430
ABID97
_RS06435
carbon source
D-Gluconic Acid (C)
-1.1
-1.6
-0.2
-1.4
N.D.
carbon source
Gly-Glu (C)
-1.4
-1.7
-0.4
-0.9
N.D.
carbon source
D-Gluconic Acid (C)
-1.2
-1.3
-0.4
-1.2
N.D.
carbon source
D-Glucuronic Acid (C)
+0.3
-2.2
-0.3
-1.9
N.D.
carbon source
D-Mannose (C)
-1.1
-1.3
-0.7
-0.8
N.D.
carbon source
L-Malic (C)
-2.0
-0.3
-0.3
-1.3
N.D.
carbon source
Gly-Glu (C)
-1.3
-1.6
+0.0
-0.9
N.D.
carbon source
D-Mannose (C)
-1.2
-1.3
-0.2
-0.9
N.D.
carbon source
L-Malic (C)
-1.7
-0.2
-0.3
-1.1
N.D.
carbon source
butyrate (C)
-1.5
-1.2
-0.3
-0.1
N.D.
carbon source
L-Histidine (C)
-0.8
-2.0
-0.9
+0.5
N.D.
carbon source
butyrate (C)
-1.4
-0.9
-0.5
-0.4
N.D.
carbon source
D-Arabinose (C)
-1.6
-0.4
-0.1
-1.0
N.D.
carbon source
succinate (C)
-1.6
-0.2
-0.2
-1.1
N.D.
carbon source
D,L-Malic Acid (C)
-1.5
-1.6
-0.1
+0.3
N.D.
carbon source
D-Lactate (C)
-1.5
-0.1
-0.4
-0.8
N.D.
carbon source
Adenine (C)
-1.4
-0.5
-0.5
-0.4
N.D.
carbon source
L-Alanine (C)
-1.0
-1.3
+0.4
-0.8
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
-1.4
-0.5
-1.2
N.D.
carbon source
L-Histidine (C)
-0.9
-1.2
-1.0
+0.6
N.D.
carbon source
succinate (C)
-1.5
-0.3
+0.3
-0.8
N.D.
carbon source
pyruvate (C)
-1.8
+0.1
+0.3
-0.6
N.D.
carbon source
Tween 20 (C)
-1.1
-0.3
+1.0
-0.5
N.D.
carbon source
D-Glucose (C)
+1.3
+0.3
-0.1
-1.4
N.D.
carbon source
D-Glucose (C)
+1.5
+0.1
-0.1
-1.3
N.D.
phage
V1_10
+3.5
-0.1
-0.7
-0.0
N.D.
phage
V1_10
+3.7
-0.2
-0.2
-0.3
N.D.
phage
V2_10
+3.7
+0.1
-0.6
-0.1
N.D.
phage
V2_10
+3.7
-0.1
-0.3
+0.3
N.D.
phage
V2_100
+7.0
+2.7
-0.1
+0.6
N.D.
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