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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS06290 and ABID97_RS06295 overlap by 35 nucleotides
ABID97_RS06295 and ABID97_RS06300 overlap by 4 nucleotides
ABID97_RS06300 and ABID97_RS06305 are separated by 28 nucleotides
ABID97_RS06305 and ABID97_RS06310 overlap by 4 nucleotides
ABID97_RS06290: ABID97_RS06290 - DUF2809 domain-containing protein, at 1,328,056 to 1,328,472
_RS06290
ABID97_RS06295: ABID97_RS06295 - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,328,438 to 1,329,181
_RS06295
ABID97_RS06300: ABID97_RS06300 - shikimate dehydrogenase, at 1,329,178 to 1,330,035
_RS06300
ABID97_RS06305: ABID97_RS06305 - TonB family protein, at 1,330,064 to 1,330,915
_RS06305
ABID97_RS06310: ABID97_RS06310 - RNB domain-containing ribonuclease, at 1,330,912 to 1,332,973
_RS06310
Group
Condition
ABID97
_RS06290
ABID97
_RS06295
ABID97
_RS06300
ABID97
_RS06305
ABID97
_RS06310
carbon source
D-Glucose (C)
-0.0
-0.6
N.D.
-0.8
N.D.
phage
V1_10
-0.0
+0.0
N.D.
-1.2
N.D.
phage
V1_10
+0.1
-0.2
N.D.
-1.1
N.D.
phage
V2_10
-0.1
+0.1
N.D.
-1.1
N.D.
phage
V2_10
-0.0
+0.1
N.D.
-0.9
N.D.
carbon source
propionate (C)
-0.0
-0.5
N.D.
+0.6
N.D.
carbon source
L-Arabinose (C)
+0.0
-0.4
N.D.
+0.5
N.D.
carbon source
acetate (C)
+0.1
-0.3
N.D.
+0.6
N.D.
carbon source
L-Glutamine (C)
-0.0
-0.2
N.D.
+0.7
N.D.
carbon source
Fumarate (C)
+0.1
-0.3
N.D.
+0.7
N.D.
carbon source
Tween 20 (C)
+0.1
-0.2
N.D.
+0.5
N.D.
carbon source
L-Glutamine (C)
-0.0
-0.3
N.D.
+0.8
N.D.
carbon source
butyrate (C)
+0.1
-0.3
N.D.
+0.7
N.D.
carbon source
Tween 20 (C)
+0.3
-0.2
N.D.
+0.4
N.D.
carbon source
L-Lactate (C)
-0.0
-0.1
N.D.
+0.8
N.D.
carbon source
L-Glutamic (C)
+0.0
-0.2
N.D.
+0.8
N.D.
carbon source
L-Glutamic (C)
-0.1
-0.1
N.D.
+0.9
N.D.
carbon source
succinate (C)
+0.1
-0.2
N.D.
+0.9
N.D.
carbon source
L-Lactate (C)
+0.1
-0.1
N.D.
+0.8
N.D.
carbon source
pyruvate (C)
+0.2
-0.1
N.D.
+0.7
N.D.
carbon source
L-Alanine (C)
-0.0
+0.2
N.D.
+0.6
N.D.
carbon source
acetate (C)
-0.0
+0.1
N.D.
+0.7
N.D.
carbon source
L-Malic (C)
+0.1
-0.2
N.D.
+0.9
N.D.
carbon source
butyrate (C)
-0.1
+0.1
N.D.
+0.8
N.D.
carbon source
D-Arabinose (C)
+0.1
-0.1
N.D.
+0.8
N.D.
carbon source
L-Malic (C)
-0.1
-0.2
N.D.
+1.1
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
+0.0
N.D.
+0.7
N.D.
carbon source
propionate (C)
-0.1
-0.1
N.D.
+1.1
N.D.
carbon source
D-Lactate (C)
+0.1
+0.1
N.D.
+0.8
N.D.
carbon source
Gly-Glu (C)
+0.2
+0.0
N.D.
+1.0
N.D.
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