Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS06030 and ABID97_RS06035 are separated by 11 nucleotidesABID97_RS06035 and ABID97_RS06040 are separated by 100 nucleotidesABID97_RS06040 and ABID97_RS06045 overlap by 4 nucleotidesABID97_RS06045 and ABID97_RS06050 overlap by 4 nucleotides ABID97_RS06030: ABID97_RS06030 - putative DNA modification/repair radical SAM protein, at 1,275,230 to 1,276,483 _RS06030 ABID97_RS06035: ABID97_RS06035 - UdgX family uracil-DNA binding protein, at 1,276,495 to 1,277,961 _RS06035 ABID97_RS06040: ABID97_RS06040 - dihydroorotase, at 1,278,062 to 1,279,093 _RS06040 ABID97_RS06045: ABID97_RS06045 - NYN domain-containing protein, at 1,279,090 to 1,279,932 _RS06045 ABID97_RS06050: ABID97_RS06050 - DUF3025 domain-containing protein, at 1,279,929 to 1,280,672 _RS06050
Group Condition ABID97_RS06030 ABID97_RS06035 ABID97_RS06040 ABID97_RS06045 ABID97_RS06050
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.3 N.D. +0.1 -2.7
phage V2_100 +0.1 +0.3 N.D. -0.3 -2.1
carbon source D-Glucose (C) -0.2 -0.1 N.D. -0.7 -0.9
carbon source L-Proline (C) -0.0 +0.1 N.D. -0.4 -1.4
carbon source 2-Deoxy-D-Ribose (C) -0.2 -0.0 N.D. -0.2 -0.9
carbon source 4-Hydroxybenzoic Acid (C) -0.0 -0.0 N.D. -0.4 -0.6
carbon source D-Arabinose (C) -0.1 -0.0 N.D. -0.2 -0.7
carbon source Fumarate (C) -0.1 +0.1 N.D. -0.5 -0.5
carbon source D-Lactate (C) -0.2 -0.1 N.D. -0.4 -0.3
carbon source 4-Hydroxybenzoic Acid (C) -0.0 +0.2 N.D. +0.0 -1.2
carbon source D-Galactose (C) +0.1 +0.0 N.D. -0.4 -0.5
carbon source L-Alanine (C) +0.0 -0.4 N.D. +0.1 -0.4
carbon source L-Asparagine (C) +0.3 +0.2 N.D. -0.2 -0.9
carbon source D-Ribose (C) +0.2 +0.1 N.D. -0.3 -0.6
carbon source Glycerol (C) +0.0 +0.2 N.D. -0.7 -0.1
carbon source acetate (C) +0.2 +0.1 N.D. -0.0 -0.8
carbon source L-Glutamine (C) +0.1 -0.0 N.D. -0.6 +0.6
phage V2_10 +0.1 +0.0 N.D. +0.4 -0.5
carbon source L-Phenylalanine (C) -0.2 -0.0 N.D. -0.2 +0.8
carbon source propionate (C) +0.1 -0.1 N.D. -0.7 +1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.1 N.D. -0.2 +0.5
carbon source Ethanol (C) +0.0 +0.2 N.D. -0.3 +0.8
carbon source Glucuronamide (C) +0.1 -0.0 N.D. -0.2 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.1 N.D. +0.2 +0.8
carbon source pyruvate (C) +0.0 +0.2 N.D. -0.3 +0.8
carbon source L-Histidine (C) +0.2 -0.1 N.D. -0.1 +0.9
carbon source L-Arabinose (C) -0.0 +0.3 N.D. -0.1 +0.7
carbon source Tween 20 (C) -0.2 +0.1 N.D. +0.1 +1.0
carbon source butyrate (C) +0.0 +0.1 N.D. +0.2 +1.1
carbon source L-Histidine (C) +0.2 +0.2 N.D. -0.1 +1.1
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ABID97_RS06030
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ABID97_RS06035
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ABID97_RS06045
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