Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS06015 and ABID97_RS06020 overlap by 16 nucleotidesABID97_RS06020 and ABID97_RS06025 are separated by 60 nucleotidesABID97_RS06025 and ABID97_RS06030 are separated by 120 nucleotidesABID97_RS06030 and ABID97_RS06035 are separated by 11 nucleotides ABID97_RS06015: ABID97_RS06015 - LysR substrate-binding domain-containing protein, at 1,273,329 to 1,274,261 _RS06015 ABID97_RS06020: ABID97_RS06020 - hypothetical protein, at 1,274,246 to 1,274,485 _RS06020 ABID97_RS06025: ABID97_RS06025 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 1,274,546 to 1,275,109 _RS06025 ABID97_RS06030: ABID97_RS06030 - putative DNA modification/repair radical SAM protein, at 1,275,230 to 1,276,483 _RS06030 ABID97_RS06035: ABID97_RS06035 - UdgX family uracil-DNA binding protein, at 1,276,495 to 1,277,961 _RS06035
Group Condition ABID97_RS06015 ABID97_RS06020 ABID97_RS06025 ABID97_RS06030 ABID97_RS06035
carbon source butyrate (C) +0.1 -1.0 -0.2 +0.0 +0.1
carbon source L-Alanine (C) -0.1 -0.6 +0.2 +0.0 -0.4
carbon source Tween 20 (C) +0.1 -0.5 -0.2 -0.0 -0.2
carbon source L-Histidine (C) +0.1 -0.8 +0.1 +0.2 -0.1
phage V2_10 -0.1 +0.1 -0.4 +0.0 -0.3
carbon source L-tyrosine (C) +0.2 -0.4 -0.2 -0.1 -0.0
carbon source L-Phenylalanine (C) +0.0 -0.4 +0.1 -0.2 -0.0
carbon source D,L-Malic Acid (C) +0.2 -0.3 -0.3 +0.0 -0.0
carbon source L-Phenylalanine (C) +0.0 -0.6 +0.3 -0.1 -0.0
carbon source propionate (C) +0.3 -0.9 -0.3 +0.2 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.6 +0.5 -0.2 -0.1
carbon source L-Lactate (C) +0.1 -0.5 -0.2 +0.2 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.3 -0.0 +0.3 -0.3
carbon source butyrate (C) +0.0 -0.5 -0.1 +0.1 +0.2
carbon source Gly-Glu (C) +0.2 -0.1 -0.2 -0.2 +0.1
carbon source L-Alanine (C) -0.1 -0.4 +0.3 -0.1 +0.0
r2a outgrowth control R2A outgrowth control -0.0 -0.6 +0.4 -0.0 +0.0
carbon source propionate (C) +0.1 -0.4 +0.1 +0.1 -0.1
carbon source Glucuronamide (C) -0.1 -0.3 +0.2 +0.2 -0.1
carbon source L-Tryptophan (C) +0.1 -0.5 +0.3 -0.0 +0.1
carbon source D-Serine (C) +0.1 -0.4 +0.3 +0.2 -0.1
carbon source L-Arabinose (C) +0.1 -0.3 +0.2 -0.0 +0.3
carbon source L-Histidine (C) +0.2 -0.3 +0.0 +0.2 +0.2
carbon source casaminos (C) -0.1 +0.1 +0.4 -0.1 +0.2
carbon source L-Malic (C) +0.1 -0.2 +0.4 +0.1 +0.1
r2a outgrowth control R2A outgrowth control +0.0 -0.2 +0.4 +0.1 +0.2
carbon source Ethanol (C) +0.3 -0.1 +0.3 +0.0 +0.2
carbon source L-Arabinose (C) +0.1 +0.1 +0.3 +0.3 -0.2
carbon source acetate (C) +0.1 +0.3 +0.4 +0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.1 +0.7 +0.2 +0.1
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ABID97_RS06015
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ABID97_RS06020
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