Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS06005 and ABID97_RS06010 are separated by 29 nucleotidesABID97_RS06010 and ABID97_RS06015 are separated by 146 nucleotidesABID97_RS06015 and ABID97_RS06020 overlap by 16 nucleotidesABID97_RS06020 and ABID97_RS06025 are separated by 60 nucleotides ABID97_RS06005: ABID97_RS06005 - acetyl-CoA C-acyltransferase, at 1,269,830 to 1,271,020 _RS06005 ABID97_RS06010: ABID97_RS06010 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 1,271,050 to 1,273,182 _RS06010 ABID97_RS06015: ABID97_RS06015 - LysR substrate-binding domain-containing protein, at 1,273,329 to 1,274,261 _RS06015 ABID97_RS06020: ABID97_RS06020 - hypothetical protein, at 1,274,246 to 1,274,485 _RS06020 ABID97_RS06025: ABID97_RS06025 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 1,274,546 to 1,275,109 _RS06025
Group Condition ABID97_RS06005 ABID97_RS06010 ABID97_RS06015 ABID97_RS06020 ABID97_RS06025
carbon source butyrate (C) -0.3 +0.0 +0.1 -1.0 -0.2
carbon source D-Glucose (C) -0.2 -0.3 -0.2 -0.1 -0.3
carbon source L-Histidine (C) -0.2 -0.3 +0.1 -0.8 +0.1
carbon source Tween 20 (C) +0.0 -0.2 +0.1 -0.5 -0.2
carbon source L-Lactate (C) -0.1 -0.0 +0.1 -0.5 -0.2
carbon source L-Alanine (C) -0.0 -0.0 -0.1 -0.6 +0.2
carbon source propionate (C) +0.3 +0.0 +0.3 -0.9 -0.3
carbon source L-Proline (C) +0.1 -0.2 +0.0 -0.1 -0.4
carbon source L-tyrosine (C) +0.4 -0.5 +0.2 -0.4 -0.2
carbon source L-Phenylalanine (C) +0.0 -0.2 +0.0 -0.4 +0.1
carbon source L-Alanine (C) -0.2 +0.0 -0.1 -0.4 +0.3
carbon source butyrate (C) +0.1 +0.2 +0.0 -0.5 -0.1
r2a outgrowth control R2A outgrowth control +0.0 -0.1 -0.0 -0.6 +0.4
carbon source L-Phenylalanine (C) +0.2 -0.1 +0.0 -0.6 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.1 +0.1 -0.6 +0.5
carbon source L-Tryptophan (C) +0.0 -0.0 +0.1 -0.5 +0.3
carbon source D-Galactose (C) +0.3 -0.1 +0.1 +0.1 -0.4
carbon source D,L-Malic Acid (C) +0.3 +0.1 +0.2 -0.3 -0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.1 +0.2 +0.3 -0.4 -0.1
carbon source L-Arabinose (C) -0.1 -0.4 +0.1 +0.1 +0.3
carbon source L-Asparagine (C) +0.2 +0.1 +0.2 -0.0 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.1 +0.1 -0.3 -0.0
carbon source propionate (C) +0.3 +0.0 +0.1 -0.4 +0.1
phage V2_100 -0.0 +0.6 -0.2 +0.0 -0.0
carbon source D-Serine (C) +0.2 +0.2 +0.1 -0.4 +0.3
carbon source D-Sorbitol (C) -0.1 +0.2 +0.1 -0.1 +0.4
carbon source Gly-Glu (C) +0.2 +0.2 +0.2 -0.1 +0.2
carbon source acetate (C) +0.2 -0.1 +0.1 +0.3 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.2 +0.1 -0.1 +0.7
carbon source 4-Hydroxybenzoic Acid (C) +0.4 +0.3 +0.3 +0.1 +0.2
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